Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.96■□□□□ 0.797e-82■□□□□ 8.6
YBX3P16989 OAT-206ENST00000490096 579 ntTSL 512.9□□□□□ -0.343e-8■□□□□ 8.5
YBX3P16989 OAT-207ENST00000492376 620 ntTSL 37□□□□□ -1.293e-8■□□□□ 8.5
YBX3P16989 OAT-204ENST00000476917 646 ntTSL 35.54□□□□□ -1.523e-8■□□□□ 8.5
YBX3P16989 WDR45-222ENST00000476728 569 ntTSL 426.92■■□□□ 1.98e-10■□□□□ 8.5
YBX3P16989 WDR45-233ENST00000634736 757 ntTSL 526.92■■□□□ 1.98e-10■□□□□ 8.5
YBX3P16989 WDR45-243ENST00000635666 947 ntTSL 525.82■■□□□ 1.728e-10■□□□□ 8.5
YBX3P16989 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.678e-10■□□□□ 8.5
YBX3P16989 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC25.19■■□□□ 1.628e-10■□□□□ 8.5
YBX3P16989 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC23.42■■□□□ 1.348e-10■□□□□ 8.5
YBX3P16989 WDR45-242ENST00000635344 737 ntTSL 523.27■■□□□ 1.328e-10■□□□□ 8.5
YBX3P16989 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC23.19■■□□□ 1.38e-10■□□□□ 8.5
YBX3P16989 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.91■■□□□ 1.18e-10■□□□□ 8.5
YBX3P16989 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC21.67■■□□□ 1.068e-10■□□□□ 8.5
YBX3P16989 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC21.2■□□□□ 0.988e-10■□□□□ 8.5
YBX3P16989 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.98■□□□□ 0.798e-10■□□□□ 8.5
YBX3P16989 WDR45-220ENST00000475880 872 ntTSL 519.66■□□□□ 0.748e-10■□□□□ 8.5
YBX3P16989 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.688e-10■□□□□ 8.5
YBX3P16989 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.26■□□□□ 0.678e-10■□□□□ 8.5
YBX3P16989 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC19.05■□□□□ 0.648e-10■□□□□ 8.5
YBX3P16989 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.74■□□□□ 0.598e-10■□□□□ 8.5
YBX3P16989 WDR45-209ENST00000419567 643 ntTSL 518.31■□□□□ 0.528e-10■□□□□ 8.5
YBX3P16989 WDR45-217ENST00000472654 605 ntTSL 317.99■□□□□ 0.478e-10■□□□□ 8.5
YBX3P16989 WDR45-229ENST00000634522 545 ntTSL 517.69■□□□□ 0.428e-10■□□□□ 8.5
YBX3P16989 WDR45-219ENST00000474053 728 ntTSL 517.57■□□□□ 0.48e-10■□□□□ 8.5
YBX3P16989 WDR45-203ENST00000367375 996 ntTSL 516.54■□□□□ 0.248e-10■□□□□ 8.5
YBX3P16989 WDR45-216ENST00000471338 699 ntTSL 516.03■□□□□ 0.168e-10■□□□□ 8.5
YBX3P16989 WDR45-210ENST00000423215 816 ntTSL 515.65■□□□□ 0.18e-10■□□□□ 8.5
YBX3P16989 WDR45-211ENST00000433252 1096 ntTSL 215.52■□□□□ 0.088e-10■□□□□ 8.5
YBX3P16989 WDR45-236ENST00000634852 763 ntTSL 514.07□□□□□ -0.168e-10■□□□□ 8.5
YBX3P16989 WDR45-215ENST00000465806 2610 ntTSL 213.67□□□□□ -0.228e-10■□□□□ 8.5
YBX3P16989 RBM3-210ENST00000491236 729 ntTSL 225.08■■□□□ 1.614e-11■□□□□ 8.5
YBX3P16989 RBM3-206ENST00000485213 947 ntTSL 224.69■■□□□ 1.544e-11■□□□□ 8.5
YBX3P16989 RBM3-207ENST00000488216 835 ntTSL 322.49■■□□□ 1.194e-11■□□□□ 8.5
YBX3P16989 RBM3-211ENST00000491240 951 ntTSL 1 (best)22.19■■□□□ 1.144e-11■□□□□ 8.5
YBX3P16989 RBM3-204ENST00000466764 1375 ntTSL 321.45■■□□□ 1.024e-11■□□□□ 8.5
YBX3P16989 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.944e-11■□□□□ 8.5
YBX3P16989 RBM3-205ENST00000472897 501 ntTSL 519.86■□□□□ 0.774e-11■□□□□ 8.5
YBX3P16989 RBM3-208ENST00000489344 724 ntTSL 219.83■□□□□ 0.774e-11■□□□□ 8.5
YBX3P16989 RBM3-209ENST00000490127 567 ntTSL 515.54■□□□□ 0.084e-11■□□□□ 8.5
YBX3P16989 RBM3-203ENST00000376759 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.164e-11■□□□□ 8.5
YBX3P16989 PLCD1-207ENST00000484829 1044 ntTSL 524.93■■□□□ 1.585e-8■□□□□ 8.5
YBX3P16989 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.033e-51■□□□□ 8.5
YBX3P16989 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC20.21■□□□□ 0.833e-51■□□□□ 8.5
YBX3P16989 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.653e-51■□□□□ 8.5
YBX3P16989 RPS9-206ENST00000436445 752 ntTSL 219.11■□□□□ 0.653e-51■□□□□ 8.5
YBX3P16989 RPS9-208ENST00000445961 944 ntTSL 519.11■□□□□ 0.653e-51■□□□□ 8.5
YBX3P16989 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.72■□□□□ 0.593e-51■□□□□ 8.5
YBX3P16989 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.583e-51■□□□□ 8.5
YBX3P16989 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC17.82■□□□□ 0.443e-51■□□□□ 8.5
YBX3P16989 RPS9-209ENST00000448962 2384 ntTSL 216.17■□□□□ 0.183e-51■□□□□ 8.5
YBX3P16989 RPS9-212ENST00000495002 956 ntTSL 1 (best)15.52■□□□□ 0.083e-51■□□□□ 8.5
YBX3P16989 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.172e-6■□□□□ 8.5
YBX3P16989 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.012e-6■□□□□ 8.5
YBX3P16989 SQLE-203ENST00000518931 554 ntTSL 47.59□□□□□ -1.199e-12■□□□□ 8.5
YBX3P16989 SRRM2-227ENST00000576674 593 ntTSL 411.37□□□□□ -0.592e-30■□□□□ 8.5
YBX3P16989 ACSM3-204ENST00000561499 527 ntTSL 45.86□□□□□ -1.475e-9■□□□□ 8.5
YBX3P16989 BHLHE40-201ENST00000256495 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.213e-11■□□□□ 8.5
YBX3P16989 SRSF9-205ENST00000550458 327 ntTSL 315.93■□□□□ 0.143e-18■□□□□ 8.5
YBX3P16989 ABRAXAS1-203ENST00000503217 595 ntTSL 432.74■■■□□ 2.833e-8■□□□□ 8.5
YBX3P16989 PPP1CB-208ENST00000455580 721 ntTSL 332.08■■■□□ 2.732e-6■□□□□ 8.5
YBX3P16989 PRNP-204ENST00000457586 855 ntTSL 1 (best)31.27■■■□□ 2.62e-6■□□□□ 8.5
YBX3P16989 R3HDM4-206ENST00000590454 1006 ntTSL 328.99■■■□□ 2.232e-6■□□□□ 8.5
YBX3P16989 MCM2-203ENST00000468659 557 ntTSL 428.31■■■□□ 2.123e-8■□□□□ 8.5
YBX3P16989 R3HDM4-205ENST00000589445 705 ntTSL 328.16■■■□□ 2.12e-6■□□□□ 8.5
YBX3P16989 R3HDM4-204ENST00000589428 1704 ntTSL 326.77■■□□□ 1.882e-6■□□□□ 8.5
YBX3P16989 KMT2D-202ENST00000526209 859 ntTSL 326.7■■□□□ 1.865e-8■□□□□ 8.5
YBX3P16989 HNRNPM-204ENST00000594907 1078 ntTSL 525.81■■□□□ 1.725e-8■□□□□ 8.5
YBX3P16989 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC25.47■■□□□ 1.675e-8■□□□□ 8.5
YBX3P16989 HNRNPM-206ENST00000596984 664 ntTSL 524.58■■□□□ 1.535e-8■□□□□ 8.5
YBX3P16989 HNRNPM-213ENST00000600092 1086 ntTSL 224.58■■□□□ 1.535e-8■□□□□ 8.5
YBX3P16989 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.52e-6■□□□□ 8.5
YBX3P16989 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC24.44■■□□□ 1.52e-6■□□□□ 8.5
YBX3P16989 PRNP-202ENST00000424424 806 ntTSL 1 (best)24.24■■□□□ 1.472e-6■□□□□ 8.5
YBX3P16989 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC24.1■■□□□ 1.452e-6■□□□□ 8.5
YBX3P16989 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.365e-8■□□□□ 8.5
YBX3P16989 CORO7-PAM16-201ENST00000572274 672 ntTSL 521.23■□□□□ 0.992e-6■□□□□ 8.5
YBX3P16989 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.93■□□□□ 0.942e-6■□□□□ 8.5
YBX3P16989 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.943e-8■□□□□ 8.5
YBX3P16989 ARFGAP3-205ENST00000454099 542 ntTSL 420.79■□□□□ 0.923e-8■□□□□ 8.5
YBX3P16989 HNRNPM-214ENST00000600806 2373 ntTSL 520.78■□□□□ 0.925e-8■□□□□ 8.5
YBX3P16989 TBCD-204ENST00000571316 1509 ntTSL 1 (best)20.68■□□□□ 0.92e-6■□□□□ 8.5
YBX3P16989 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.885e-8■□□□□ 8.5
YBX3P16989 TBCD-207ENST00000571796 1940 ntTSL 1 (best)20.29■□□□□ 0.842e-6■□□□□ 8.5
YBX3P16989 ABRAXAS1-207ENST00000511801 682 ntTSL 320.08■□□□□ 0.813e-8■□□□□ 8.5
YBX3P16989 TBCD-225ENST00000576996 827 ntTSL 519.88■□□□□ 0.772e-6■□□□□ 8.5
YBX3P16989 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC19.64■□□□□ 0.732e-6■□□□□ 8.5
YBX3P16989 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.72e-6■□□□□ 8.5
YBX3P16989 PSMB5-206ENST00000555895 444 ntTSL 319.43■□□□□ 0.72e-6■□□□□ 8.5
YBX3P16989 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.665e-8■□□□□ 8.5
YBX3P16989 THOC5-205ENST00000414902 484 ntTSL 519.06■□□□□ 0.643e-8■□□□□ 8.5
YBX3P16989 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.643e-8■□□□□ 8.5
YBX3P16989 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.582e-6■□□□□ 8.5
YBX3P16989 PLD3-212ENST00000486134 327 ntTSL 218.62■□□□□ 0.573e-8■□□□□ 8.5
YBX3P16989 PAM16-213ENST00000575942 806 ntTSL 318.41■□□□□ 0.542e-6■□□□□ 8.5
YBX3P16989 CDCA7-205ENST00000435616 928 ntTSL 318.19■□□□□ 0.52e-6■□□□□ 8.5
YBX3P16989 GTF3C3-206ENST00000448539 796 ntTSL 317.97■□□□□ 0.475e-8■□□□□ 8.5
YBX3P16989 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.473e-8■□□□□ 8.5
YBX3P16989 CABIN1-211ENST00000485008 771 ntTSL 317.58■□□□□ 0.42e-6■□□□□ 8.5
YBX3P16989 R3HDM4-207ENST00000591829 823 ntTSL 517.19■□□□□ 0.342e-6■□□□□ 8.5
Retrieved 100 of 29,075 protein–RNA pairs in 487 ms