Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VCANP13611 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VCANP13611 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VCANP13611 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC14.41□□□□□ -0.1
VCANP13611 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
VCANP13611 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
VCANP13611 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VCANP13611 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 HNRNPA1P68-201ENST00000425806 979 ntBASIC14.4□□□□□ -0.1
VCANP13611 C5orf38-203ENST00000457752 387 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 RN7SL148P-201ENST00000467120 279 ntBASIC14.4□□□□□ -0.1
VCANP13611 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC14.4□□□□□ -0.1
VCANP13611 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
VCANP13611 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.4□□□□□ -0.1
VCANP13611 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC14.4□□□□□ -0.1
VCANP13611 AL009176.1-201ENST00000607876 650 ntBASIC14.4□□□□□ -0.1
VCANP13611 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC14.4□□□□□ -0.1
VCANP13611 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.4□□□□□ -0.1
VCANP13611 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.4□□□□□ -0.1
VCANP13611 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 MLN-202ENST00000430124 566 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 TCP10L-202ENST00000472557 732 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
VCANP13611 AC093700.1-201ENST00000503348 717 ntBASIC14.4□□□□□ -0.1
VCANP13611 PDPN-208ENST00000509009 571 ntTSL 4 BASIC14.4□□□□□ -0.1
VCANP13611 MIR2277-201ENST00000515916 93 ntBASIC14.4□□□□□ -0.1
VCANP13611 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
VCANP13611 RBM7-208ENST00000545678 867 ntTSL 3 BASIC14.4□□□□□ -0.1
VCANP13611 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC14.4□□□□□ -0.1
VCANP13611 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 AC009093.10-201ENST00000641956 1442 ntBASIC14.4□□□□□ -0.1
VCANP13611 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VCANP13611 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 HSD3BP1-201ENST00000286193 1111 ntBASIC14.4□□□□□ -0.1
VCANP13611 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
VCANP13611 SERPINB8P1-201ENST00000401898 377 ntBASIC14.4□□□□□ -0.1
VCANP13611 MRPS16P3-201ENST00000415961 374 ntBASIC14.4□□□□□ -0.1
VCANP13611 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC14.4□□□□□ -0.1
VCANP13611 AC113398.1-201ENST00000464124 406 ntBASIC14.4□□□□□ -0.1
VCANP13611 IGKV2-28-201ENST00000482769 390 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
VCANP13611 AP001979.2-201ENST00000526254 975 ntTSL 5 BASIC14.4□□□□□ -0.1
VCANP13611 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 RTP2-201ENST00000358241 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VCANP13611 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC14.4□□□□□ -0.1
VCANP13611 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.4□□□□□ -0.11
VCANP13611 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.39□□□□□ -0.11
VCANP13611 NKAPP1-203ENST00000554109 573 ntTSL 4 BASIC14.39□□□□□ -0.11
VCANP13611 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC14.39□□□□□ -0.11
VCANP13611 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 AC012313.2-201ENST00000599952 1154 ntTSL 5 BASIC14.39□□□□□ -0.11
VCANP13611 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VCANP13611 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.39□□□□□ -0.11
VCANP13611 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 RIPPLY2-201ENST00000369687 521 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 LCN12-202ENST00000371633 579 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 CLK2P1-201ENST00000416636 1294 ntBASIC14.39□□□□□ -0.11
VCANP13611 PCTP-206ENST00000573500 919 ntTSL 3 BASIC14.39□□□□□ -0.11
VCANP13611 AC022296.3-201ENST00000608823 403 ntBASIC14.39□□□□□ -0.11
VCANP13611 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VCANP13611 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 TUBB8-207ENST00000568866 1367 ntTSL 5 BASIC14.39□□□□□ -0.11
VCANP13611 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VCANP13611 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.39□□□□□ -0.11
VCANP13611 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 MPV17-209ENST00000405983 859 ntTSL 5 BASIC14.39□□□□□ -0.11
VCANP13611 AC007690.1-201ENST00000451924 468 ntBASIC14.39□□□□□ -0.11
VCANP13611 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
VCANP13611 RPL29P2-201ENST00000488409 460 ntBASIC14.39□□□□□ -0.11
VCANP13611 GIMD1-201ENST00000507153 654 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms