Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.98■□□□□ 0.15
TPM1P09493 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.98■□□□□ 0.15
TPM1P09493 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.98■□□□□ 0.15
TPM1P09493 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.98■□□□□ 0.15
TPM1P09493 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.98■□□□□ 0.15
TPM1P09493 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.98■□□□□ 0.15
TPM1P09493 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.98■□□□□ 0.15
TPM1P09493 AC019294.4-201ENST00000561777 2905 ntBASIC15.98■□□□□ 0.15
TPM1P09493 AL359711.2-201ENST00000563105 872 ntBASIC15.98■□□□□ 0.15
TPM1P09493 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.98■□□□□ 0.15
TPM1P09493 AC138696.2-201ENST00000607376 223 ntBASIC15.98■□□□□ 0.15
TPM1P09493 AC093726.1-201ENST00000608064 963 ntBASIC15.98■□□□□ 0.15
TPM1P09493 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.98■□□□□ 0.15
TPM1P09493 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.98■□□□□ 0.15
TPM1P09493 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.98■□□□□ 0.15
TPM1P09493 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.98■□□□□ 0.15
TPM1P09493 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TPM1P09493 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC15.98■□□□□ 0.15
TPM1P09493 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
TPM1P09493 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TPM1P09493 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
TPM1P09493 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC15.97■□□□□ 0.15
TPM1P09493 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TPM1P09493 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 AMT-221ENST00000538581 2038 ntTSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.97■□□□□ 0.15
TPM1P09493 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC15.97■□□□□ 0.15
TPM1P09493 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
TPM1P09493 AC072061.1-201ENST00000569710 2234 ntBASIC15.97■□□□□ 0.15
TPM1P09493 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC15.97■□□□□ 0.15
TPM1P09493 RN7SKP230-201ENST00000365642 335 ntBASIC15.97■□□□□ 0.15
TPM1P09493 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.97■□□□□ 0.15
TPM1P09493 AC055876.3-201ENST00000431496 288 ntBASIC15.97■□□□□ 0.15
TPM1P09493 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.97■□□□□ 0.15
TPM1P09493 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.97■□□□□ 0.15
TPM1P09493 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.97■□□□□ 0.15
TPM1P09493 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 AC138649.4-201ENST00000612222 287 ntBASIC15.97■□□□□ 0.15
TPM1P09493 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 NME1-209ENST00000511355 1645 ntTSL 5 BASIC15.97■□□□□ 0.15
TPM1P09493 TNN-202ENST00000621086 4234 ntTSL 5 BASIC15.97■□□□□ 0.15
TPM1P09493 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.97■□□□□ 0.15
TPM1P09493 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TPM1P09493 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 AC064801.2-201ENST00000625052 1303 ntBASIC15.96■□□□□ 0.15
TPM1P09493 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TPM1P09493 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC15.96■□□□□ 0.15
TPM1P09493 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms