Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.49■□□□□ 0.23
USP28Q96RU2 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.49■□□□□ 0.23
USP28Q96RU2 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USP28Q96RU2 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.49■□□□□ 0.23
USP28Q96RU2 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.49■□□□□ 0.23
USP28Q96RU2 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP28Q96RU2 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USP28Q96RU2 AC099521.3-201ENST00000624251 2938 ntBASIC16.49■□□□□ 0.23
USP28Q96RU2 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP28Q96RU2 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP28Q96RU2 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
USP28Q96RU2 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP28Q96RU2 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP28Q96RU2 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
USP28Q96RU2 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
USP28Q96RU2 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
USP28Q96RU2 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.49■□□□□ 0.23
USP28Q96RU2 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
USP28Q96RU2 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
USP28Q96RU2 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.48■□□□□ 0.23
USP28Q96RU2 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
USP28Q96RU2 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
USP28Q96RU2 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC16.48■□□□□ 0.23
USP28Q96RU2 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
USP28Q96RU2 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.48■□□□□ 0.23
USP28Q96RU2 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
USP28Q96RU2 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
USP28Q96RU2 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.48■□□□□ 0.23
USP28Q96RU2 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.48■□□□□ 0.23
USP28Q96RU2 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
USP28Q96RU2 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.48■□□□□ 0.23
USP28Q96RU2 RBM8B-201ENST00000555532 525 ntBASIC16.48■□□□□ 0.23
USP28Q96RU2 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.48■□□□□ 0.23
USP28Q96RU2 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.48■□□□□ 0.23
USP28Q96RU2 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC16.48■□□□□ 0.23
USP28Q96RU2 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.48■□□□□ 0.23
USP28Q96RU2 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC16.48■□□□□ 0.23
USP28Q96RU2 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.48■□□□□ 0.23
USP28Q96RU2 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC16.48■□□□□ 0.23
USP28Q96RU2 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC16.48■□□□□ 0.23
USP28Q96RU2 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
USP28Q96RU2 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
USP28Q96RU2 AC073869.1-201ENST00000415574 2762 ntBASIC16.48■□□□□ 0.23
USP28Q96RU2 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
USP28Q96RU2 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
USP28Q96RU2 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.48■□□□□ 0.23
USP28Q96RU2 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.47■□□□□ 0.23
USP28Q96RU2 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC16.47■□□□□ 0.23
USP28Q96RU2 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC16.47■□□□□ 0.23
USP28Q96RU2 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC16.47■□□□□ 0.23
USP28Q96RU2 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.47■□□□□ 0.23
USP28Q96RU2 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.47■□□□□ 0.23
USP28Q96RU2 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.47■□□□□ 0.23
USP28Q96RU2 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
USP28Q96RU2 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.47■□□□□ 0.23
USP28Q96RU2 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.47■□□□□ 0.23
USP28Q96RU2 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.47■□□□□ 0.23
USP28Q96RU2 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
USP28Q96RU2 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.47■□□□□ 0.23
USP28Q96RU2 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
USP28Q96RU2 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC16.47■□□□□ 0.23
USP28Q96RU2 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.47■□□□□ 0.23
USP28Q96RU2 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
USP28Q96RU2 DGCR9-201ENST00000609630 2415 ntBASIC16.47■□□□□ 0.23
USP28Q96RU2 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 GALC-206ENST00000544807 2528 ntTSL 2 BASIC16.47■□□□□ 0.23
USP28Q96RU2 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
USP28Q96RU2 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.47■□□□□ 0.23
USP28Q96RU2 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
USP28Q96RU2 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC16.46■□□□□ 0.23
USP28Q96RU2 AC135782.3-201ENST00000562782 2105 ntBASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms