Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 MIR4783-201ENST00000580343 82 ntBASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 DRG2-220ENST00000583355 891 ntTSL 3 BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 AC005962.1-201ENST00000584100 773 ntBASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 AL359881.2-201ENST00000602973 570 ntBASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
CDK5RAP3Q96JB5 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 KLF2P1-201ENST00000447438 1042 ntBASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 FAM86HP-204ENST00000513466 959 ntBASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDK5RAP3Q96JB5 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 TUBB8P8-201ENST00000458717 1058 ntBASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 AL583810.1-201ENST00000553344 1045 ntBASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 Z98259.2-201ENST00000641583 609 ntBASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 AL928921.2-201ENST00000641325 2442 ntBASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.31■□□□□ 0.2
CDK5RAP3Q96JB5 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 KRT8P29-201ENST00000420409 1371 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms