Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 CRCP-204ENST00000398684 492 ntTSL 2 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 AL008707.1-201ENST00000422498 534 ntBASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 AC016700.1-201ENST00000429424 312 ntBASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 Z97180.1-201ENST00000445173 988 ntBASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 AL021578.1-201ENST00000613646 709 ntBASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 AC022748.3-201ENST00000621828 275 ntBASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 PPA1-206ENST00000625364 644 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.07□□□□□ -0.16
CLIP3Q96DZ5 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 DPM3-202ENST00000368399 517 ntBASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 AL662890.1-201ENST00000396818 632 ntBASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 AC104073.2-201ENST00000453737 312 ntBASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 C2-206ENST00000442278 2434 ntTSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 CICP16-201ENST00000502609 2813 ntBASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 FANCC-210ENST00000490972 2709 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms