Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
TM9SF4Q92544 AC009955.4-201ENST00000597192 544 ntBASIC13.71□□□□□ -0.21
TM9SF4Q92544 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.71□□□□□ -0.21
TM9SF4Q92544 AP000346.4-201ENST00000614827 381 ntBASIC13.71□□□□□ -0.21
TM9SF4Q92544 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
TM9SF4Q92544 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.71□□□□□ -0.21
TM9SF4Q92544 AC068587.8-201ENST00000641239 219 ntBASIC13.71□□□□□ -0.21
TM9SF4Q92544 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
TM9SF4Q92544 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
TM9SF4Q92544 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
TM9SF4Q92544 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
TM9SF4Q92544 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.71□□□□□ -0.21
TM9SF4Q92544 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
TM9SF4Q92544 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
TM9SF4Q92544 AL137783.1-201ENST00000623494 1896 ntBASIC13.71□□□□□ -0.21
TM9SF4Q92544 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.71□□□□□ -0.21
TM9SF4Q92544 AC011474.4-201ENST00000623523 2076 ntBASIC13.71□□□□□ -0.21
TM9SF4Q92544 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
TM9SF4Q92544 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
TM9SF4Q92544 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
TM9SF4Q92544 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
TM9SF4Q92544 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
TM9SF4Q92544 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
TM9SF4Q92544 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.71□□□□□ -0.22
TM9SF4Q92544 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
TM9SF4Q92544 AC089987.1-201ENST00000551654 2209 ntBASIC13.71□□□□□ -0.22
TM9SF4Q92544 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.71□□□□□ -0.22
TM9SF4Q92544 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
TM9SF4Q92544 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.22
TM9SF4Q92544 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
TM9SF4Q92544 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
TM9SF4Q92544 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
TM9SF4Q92544 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.71□□□□□ -0.22
TM9SF4Q92544 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
TM9SF4Q92544 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
TM9SF4Q92544 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
TM9SF4Q92544 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
TM9SF4Q92544 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
TM9SF4Q92544 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 RN7SKP214-201ENST00000364208 315 ntBASIC13.7□□□□□ -0.22
TM9SF4Q92544 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 AL596276.2-201ENST00000447525 331 ntBASIC13.7□□□□□ -0.22
TM9SF4Q92544 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 AC012618.1-201ENST00000461223 412 ntBASIC13.7□□□□□ -0.22
TM9SF4Q92544 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 AC134698.3-201ENST00000523880 214 ntBASIC13.7□□□□□ -0.22
TM9SF4Q92544 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 MIR3907-201ENST00000579424 151 ntBASIC13.7□□□□□ -0.22
TM9SF4Q92544 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 AC128714.1-201ENST00000637035 887 ntBASIC13.7□□□□□ -0.22
TM9SF4Q92544 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 AL359881.3-201ENST00000602640 1721 ntBASIC13.7□□□□□ -0.22
TM9SF4Q92544 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
TM9SF4Q92544 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
TM9SF4Q92544 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
TM9SF4Q92544 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
TM9SF4Q92544 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
TM9SF4Q92544 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
TM9SF4Q92544 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
TM9SF4Q92544 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.69□□□□□ -0.22
TM9SF4Q92544 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms