Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 AL109935.1-201ENST00000413249 473 ntTSL 3 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 XBP1P1-201ENST00000436573 652 ntBASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 AC009779.1-201ENST00000551138 283 ntBASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 AC021016.3-201ENST00000608367 477 ntBASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SCUBE3Q8IX30 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC15.21■□□□□ 0.02
SCUBE3Q8IX30 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.02
SCUBE3Q8IX30 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SCUBE3Q8IX30 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.21■□□□□ 0.02
SCUBE3Q8IX30 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.21■□□□□ 0.02
SCUBE3Q8IX30 LAP3P2-201ENST00000454686 1454 ntBASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 CALR4P-201ENST00000431943 946 ntBASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 OR2R1P-201ENST00000441404 914 ntBASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 MARK2P5-201ENST00000507649 634 ntBASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 AL132994.2-201ENST00000603120 687 ntBASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SCUBE3Q8IX30 AHCYP4-201ENST00000419201 1315 ntBASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 AC078875.1-201ENST00000431907 724 ntBASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC15.19■□□□□ 0.02
SCUBE3Q8IX30 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms