Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 AC010327.5-201ENST00000586923 3061 ntBASIC17.26■□□□□ 0.35
RNF20Q5VTR2 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF20Q5VTR2 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 Z93015.1-201ENST00000451718 390 ntBASIC17.25■□□□□ 0.35
RNF20Q5VTR2 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 RNA5SP412-201ENST00000516234 123 ntBASIC17.25■□□□□ 0.35
RNF20Q5VTR2 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 AC124068.2-201ENST00000569473 1109 ntBASIC17.25■□□□□ 0.35
RNF20Q5VTR2 KLK11-210ENST00000600362 759 ntTSL 3 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 USP3-204ENST00000540797 5474 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 AC144522.1-201ENST00000625111 1658 ntBASIC17.25■□□□□ 0.35
RNF20Q5VTR2 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC17.25■□□□□ 0.35
RNF20Q5VTR2 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 AL157996.1-201ENST00000624684 2299 ntBASIC17.24■□□□□ 0.35
RNF20Q5VTR2 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 MIR658-201ENST00000385210 100 ntBASIC17.24■□□□□ 0.35
RNF20Q5VTR2 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 MTX1P1-201ENST00000440904 838 ntBASIC17.24■□□□□ 0.35
RNF20Q5VTR2 HSPB1P2-201ENST00000448722 546 ntBASIC17.24■□□□□ 0.35
RNF20Q5VTR2 TUBB8P8-201ENST00000458717 1058 ntBASIC17.24■□□□□ 0.35
RNF20Q5VTR2 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 IGHV3-71-201ENST00000523324 359 ntBASIC17.24■□□□□ 0.35
RNF20Q5VTR2 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 AC005962.1-201ENST00000584100 773 ntBASIC17.24■□□□□ 0.35
RNF20Q5VTR2 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC17.24■□□□□ 0.35
RNF20Q5VTR2 AC133540.1-201ENST00000620845 1019 ntBASIC17.24■□□□□ 0.35
RNF20Q5VTR2 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms