Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.95□□□□□ -0.18
PCDH1Q08174 AL160314.3-201ENST00000556041 767 ntBASIC13.95□□□□□ -0.18
PCDH1Q08174 AC100827.2-201ENST00000563214 1194 ntBASIC13.95□□□□□ -0.18
PCDH1Q08174 AC021016.3-201ENST00000608367 477 ntBASIC13.95□□□□□ -0.18
PCDH1Q08174 COX11-210ENST00000639671 696 ntBASIC13.95□□□□□ -0.18
PCDH1Q08174 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.95□□□□□ -0.18
PCDH1Q08174 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.95□□□□□ -0.18
PCDH1Q08174 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.95□□□□□ -0.18
PCDH1Q08174 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.95□□□□□ -0.18
PCDH1Q08174 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCDH1Q08174 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.95□□□□□ -0.18
PCDH1Q08174 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.94□□□□□ -0.18
PCDH1Q08174 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
PCDH1Q08174 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.94□□□□□ -0.18
PCDH1Q08174 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.94□□□□□ -0.18
PCDH1Q08174 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.94□□□□□ -0.18
PCDH1Q08174 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.94□□□□□ -0.18
PCDH1Q08174 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.94□□□□□ -0.18
PCDH1Q08174 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.94□□□□□ -0.18
PCDH1Q08174 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 AC022217.1-201ENST00000521069 738 ntBASIC13.94□□□□□ -0.18
PCDH1Q08174 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 HILS1-202ENST00000545329 423 ntBASIC13.94□□□□□ -0.18
PCDH1Q08174 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.94□□□□□ -0.18
PCDH1Q08174 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 AC124068.2-201ENST00000569473 1109 ntBASIC13.94□□□□□ -0.18
PCDH1Q08174 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.94□□□□□ -0.18
PCDH1Q08174 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PCDH1Q08174 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCDH1Q08174 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.94□□□□□ -0.18
PCDH1Q08174 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
PCDH1Q08174 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
PCDH1Q08174 AC007952.5-201ENST00000572818 1486 ntBASIC13.93□□□□□ -0.18
PCDH1Q08174 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
PCDH1Q08174 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 CYP4F23P-201ENST00000593402 1579 ntBASIC13.93□□□□□ -0.18
PCDH1Q08174 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.93□□□□□ -0.18
PCDH1Q08174 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.93□□□□□ -0.18
PCDH1Q08174 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 PTENP1-202ENST00000532280 3996 ntBASIC13.93□□□□□ -0.18
PCDH1Q08174 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCDH1Q08174 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.93□□□□□ -0.18
PCDH1Q08174 ATP5G2P4-201ENST00000442175 420 ntBASIC13.93□□□□□ -0.18
PCDH1Q08174 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.93□□□□□ -0.18
PCDH1Q08174 AC006122.1-201ENST00000493323 440 ntBASIC13.93□□□□□ -0.18
PCDH1Q08174 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.93□□□□□ -0.18
PCDH1Q08174 IGHV3-71-201ENST00000523324 359 ntBASIC13.93□□□□□ -0.18
PCDH1Q08174 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
PCDH1Q08174 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.93□□□□□ -0.18
PCDH1Q08174 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
PCDH1Q08174 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms