Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 VPREB3-201ENST00000248948 610 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 VPREB3-202ENST00000398465 503 ntTSL 3 BASIC8.51□□□□□ -1.05
HSPG2P98160 RBMXP1-201ENST00000408004 1191 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 GAPDHP65-201ENST00000425487 1006 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 MLN-202ENST00000430124 566 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC8.51□□□□□ -1.05
HSPG2P98160 RN7SL677P-201ENST00000466970 319 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 PRDX2P3-201ENST00000515779 586 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 OR4A49P-201ENST00000527050 632 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC8.51□□□□□ -1.05
HSPG2P98160 MIR22HG-206ENST00000573127 899 ntTSL 3 BASIC8.51□□□□□ -1.05
HSPG2P98160 AC100778.4-201ENST00000581232 582 ntTSL 4 BASIC8.51□□□□□ -1.05
HSPG2P98160 CHCHD7-218ENST00000523975 1805 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 TUBAP-201ENST00000425085 1352 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 FAM90A27P-201ENST00000593323 1370 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 FAM90A28P-202ENST00000597191 1374 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC8.51□□□□□ -1.05
HSPG2P98160 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC8.51□□□□□ -1.05
HSPG2P98160 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 HMGN1P4-201ENST00000419500 290 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 AC067942.1-202ENST00000471756 1057 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC8.51□□□□□ -1.05
HSPG2P98160 BRCA1-225ENST00000586385 781 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 AC106872.9-201ENST00000512437 1393 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 KRT8P25-201ENST00000473150 1456 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
HSPG2P98160 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
HSPG2P98160 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC8.51□□□□□ -1.05
HSPG2P98160 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 ZNF577-202ENST00000451628 1771 ntAPPRIS ALT2 TSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC8.51□□□□□ -1.05
HSPG2P98160 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 RN7SL646P-201ENST00000492969 297 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC8.51□□□□□ -1.05
HSPG2P98160 KRTAP2-2-202ENST00000542910 390 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
HSPG2P98160 TROAP-209ENST00000549275 348 ntAPPRIS ALT2 TSL 3 BASIC8.51□□□□□ -1.05
HSPG2P98160 TROAP-210ENST00000549534 839 ntAPPRIS ALT2 TSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 MIR6749-201ENST00000617008 69 ntBASIC8.51□□□□□ -1.05
HSPG2P98160 LINC01615-203ENST00000634877 673 ntTSL 5 BASIC8.51□□□□□ -1.05
HSPG2P98160 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
HSPG2P98160 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC8.51□□□□□ -1.05
HSPG2P98160 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
HSPG2P98160 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 BTN2A2-204ENST00000432533 1570 ntTSL 2 BASIC8.5□□□□□ -1.05
HSPG2P98160 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 REG3A-201ENST00000305165 718 ntAPPRIS P1 TSL 2 BASIC8.5□□□□□ -1.05
HSPG2P98160 IL6RP1-201ENST00000417848 1273 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 RN7SL148P-201ENST00000467120 279 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 AP003062.1-201ENST00000528497 762 ntTSL 3 BASIC8.5□□□□□ -1.05
HSPG2P98160 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC8.5□□□□□ -1.05
HSPG2P98160 Metazoa_SRP.47-201ENST00000616942 279 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 AC073592.10-201ENST00000624789 597 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC8.5□□□□□ -1.05
HSPG2P98160 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 AC093627.3-201ENST00000467050 574 ntTSL 4 BASIC8.5□□□□□ -1.05
HSPG2P98160 AC104521.1-201ENST00000598582 279 ntTSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 AL033381.2-201ENST00000603854 732 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 CALU-202ENST00000449187 2438 ntAPPRIS ALT1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 AC124319.4-201ENST00000622931 2161 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
HSPG2P98160 PGR-210ENST00000619228 3038 ntTSL 5 BASIC8.5□□□□□ -1.05
HSPG2P98160 ZEB1-AS1-208ENST00000607166 2503 ntBASIC8.5□□□□□ -1.05
HSPG2P98160 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC8.5□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms