Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGB1P09429 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC17.02■□□□□ 0.32
HMGB1P09429 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.02■□□□□ 0.32
HMGB1P09429 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17.02■□□□□ 0.32
HMGB1P09429 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.02■□□□□ 0.32
HMGB1P09429 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.02■□□□□ 0.32
HMGB1P09429 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC17.02■□□□□ 0.32
HMGB1P09429 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
HMGB1P09429 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGB1P09429 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
HMGB1P09429 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC17.02■□□□□ 0.31
HMGB1P09429 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HMGB1P09429 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGB1P09429 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGB1P09429 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC17.02■□□□□ 0.31
HMGB1P09429 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC17.02■□□□□ 0.31
HMGB1P09429 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.31
HMGB1P09429 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGB1P09429 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGB1P09429 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGB1P09429 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC17.02■□□□□ 0.31
HMGB1P09429 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGB1P09429 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HMGB1P09429 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.01■□□□□ 0.31
HMGB1P09429 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGB1P09429 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
HMGB1P09429 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGB1P09429 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HMGB1P09429 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGB1P09429 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC17.01■□□□□ 0.31
HMGB1P09429 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HMGB1P09429 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.01■□□□□ 0.31
HMGB1P09429 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 OR2R1P-201ENST00000441404 914 ntBASIC17.01■□□□□ 0.31
HMGB1P09429 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC17.01■□□□□ 0.31
HMGB1P09429 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC17.01■□□□□ 0.31
HMGB1P09429 FAM8A2P-201ENST00000528813 1142 ntBASIC17.01■□□□□ 0.31
HMGB1P09429 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGB1P09429 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.01■□□□□ 0.31
HMGB1P09429 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.01■□□□□ 0.31
HMGB1P09429 RN7SL163P-201ENST00000583100 276 ntBASIC17.01■□□□□ 0.31
HMGB1P09429 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGB1P09429 AC022748.3-201ENST00000621828 275 ntBASIC17.01■□□□□ 0.31
HMGB1P09429 PCBP2-OT1-201ENST00000634357 590 ntBASIC17.01■□□□□ 0.31
HMGB1P09429 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
HMGB1P09429 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGB1P09429 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 AC023794.5-201ENST00000564380 2157 ntBASIC17.01■□□□□ 0.31
HMGB1P09429 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGB1P09429 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC17■□□□□ 0.31
HMGB1P09429 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC17■□□□□ 0.31
HMGB1P09429 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
HMGB1P09429 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC17■□□□□ 0.31
HMGB1P09429 GK-202ENST00000378941 458 ntTSL 3 BASIC17■□□□□ 0.31
HMGB1P09429 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HMGB1P09429 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17■□□□□ 0.31
HMGB1P09429 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC17■□□□□ 0.31
HMGB1P09429 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17■□□□□ 0.31
HMGB1P09429 AC104982.3-201ENST00000581995 514 ntBASIC17■□□□□ 0.31
HMGB1P09429 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
HMGB1P09429 AC007663.3-201ENST00000609632 465 ntBASIC17■□□□□ 0.31
HMGB1P09429 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC17■□□□□ 0.31
HMGB1P09429 AL136295.7-201ENST00000619226 1200 ntBASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms