Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC15.44■□□□□ 0.06
FOXN3O00409 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXN3O00409 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.44■□□□□ 0.06
FOXN3O00409 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 BNIP3P42-201ENST00000454982 569 ntBASIC15.44■□□□□ 0.06
FOXN3O00409 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 RNA5SP412-201ENST00000516234 123 ntBASIC15.44■□□□□ 0.06
FOXN3O00409 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.44■□□□□ 0.06
FOXN3O00409 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.44■□□□□ 0.06
FOXN3O00409 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
FOXN3O00409 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXN3O00409 BNIP3P29-201ENST00000598302 571 ntBASIC15.44■□□□□ 0.06
FOXN3O00409 AC011447.5-201ENST00000616168 564 ntBASIC15.44■□□□□ 0.06
FOXN3O00409 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
FOXN3O00409 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXN3O00409 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
FOXN3O00409 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXN3O00409 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXN3O00409 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
FOXN3O00409 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
FOXN3O00409 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 CCT8L1P-201ENST00000465400 1674 ntBASIC15.44■□□□□ 0.06
FOXN3O00409 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.44■□□□□ 0.06
FOXN3O00409 SBF1P1-201ENST00000444527 5631 ntBASIC15.44■□□□□ 0.06
FOXN3O00409 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXN3O00409 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
FOXN3O00409 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXN3O00409 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
FOXN3O00409 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXN3O00409 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
FOXN3O00409 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXN3O00409 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
FOXN3O00409 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.43■□□□□ 0.06
FOXN3O00409 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXN3O00409 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXN3O00409 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 KRT18P36-201ENST00000411618 1276 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXN3O00409 FAM21FP-201ENST00000426241 1131 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXN3O00409 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
FOXN3O00409 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 RPL18P13-201ENST00000478088 569 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
FOXN3O00409 SCARNA21-201ENST00000517026 139 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXN3O00409 AC022217.1-201ENST00000521069 738 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 IGHV3-71-201ENST00000523324 359 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXN3O00409 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.43■□□□□ 0.06
FOXN3O00409 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
FOXN3O00409 AC005324.6-201ENST00000587972 613 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.43■□□□□ 0.06
FOXN3O00409 MIR6805-201ENST00000615055 62 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 AC133540.1-201ENST00000620845 1019 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 AC090386.2-201ENST00000623010 1039 ntBASIC15.43■□□□□ 0.06
FOXN3O00409 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
FOXN3O00409 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
FOXN3O00409 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
FOXN3O00409 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXN3O00409 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXN3O00409 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
FOXN3O00409 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXN3O00409 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms