Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 AC131206.1-201ENST00000538078 1211 ntBASIC13.79□□□□□ -0.2
CCDC88CQ9P219 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 AC079328.1-201ENST00000560358 952 ntBASIC13.79□□□□□ -0.2
CCDC88CQ9P219 AL133499.1-201ENST00000596207 608 ntBASIC13.79□□□□□ -0.2
CCDC88CQ9P219 AC084346.2-201ENST00000607097 949 ntBASIC13.79□□□□□ -0.2
CCDC88CQ9P219 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 YRDCP1-201ENST00000621419 643 ntBASIC13.79□□□□□ -0.2
CCDC88CQ9P219 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.79□□□□□ -0.2
CCDC88CQ9P219 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CCDC88CQ9P219 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 PUDPP3-201ENST00000445368 636 ntBASIC13.78□□□□□ -0.2
CCDC88CQ9P219 AC073150.1-201ENST00000450406 1084 ntBASIC13.78□□□□□ -0.2
CCDC88CQ9P219 CEP164P1-201ENST00000455142 418 ntBASIC13.78□□□□□ -0.2
CCDC88CQ9P219 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.78□□□□□ -0.2
CCDC88CQ9P219 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 FXNP2-201ENST00000411625 547 ntBASIC13.78□□□□□ -0.2
CCDC88CQ9P219 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC88CQ9P219 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 LINC01165-201ENST00000445190 1623 ntBASIC13.77□□□□□ -0.2
CCDC88CQ9P219 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC88CQ9P219 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms