Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC13.59□□□□□ -0.23
AMBRA1Q9C0C7 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
AMBRA1Q9C0C7 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
AMBRA1Q9C0C7 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.58□□□□□ -0.23
AMBRA1Q9C0C7 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.23
AMBRA1Q9C0C7 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 STK25-235ENST00000543554 2556 ntTSL 2 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 PCDHB18P-202ENST00000526308 3197 ntBASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 MESTP3-201ENST00000503460 968 ntBASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 AP001063.1-201ENST00000568332 529 ntBASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 BX088702.1-201ENST00000610784 235 ntBASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 AL139385.1-201ENST00000611744 3272 ntBASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 AGAP12P-201ENST00000585227 2359 ntBASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 AL590440.2-201ENST00000641973 1595 ntBASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.58□□□□□ -0.24
AMBRA1Q9C0C7 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 POM121L8P-201ENST00000417732 1281 ntBASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 POM121L9P-203ENST00000441984 1285 ntBASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 AC007389.4-201ENST00000454674 793 ntBASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 AC022137.2-201ENST00000503482 481 ntBASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 CU634019.7-201ENST00000624153 1185 ntBASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.57□□□□□ -0.24
AMBRA1Q9C0C7 FP236241.2-201ENST00000624906 1185 ntBASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms