Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 TNRC18P2-201ENST00000417666 2714 ntBASIC14.14□□□□□ -0.15
CCDC3Q9BQI4 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 CICP14-201ENST00000629111 2732 ntBASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 MIR3677-201ENST00000578964 60 ntBASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 MIR3188-201ENST00000583494 85 ntBASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 AC074138.1-201ENST00000611182 1303 ntBASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CCDC3Q9BQI4 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 MBP-201ENST00000354542 575 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 AP000356.3-201ENST00000382243 753 ntBASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 KRT18P36-201ENST00000411618 1276 ntBASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 AL592076.1-201ENST00000424448 303 ntBASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 TSPY25P-201ENST00000429463 745 ntBASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 AC078991.1-201ENST00000437297 610 ntBASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 MBP-227ENST00000526111 581 ntTSL 4 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 AC092171.5-201ENST00000608012 942 ntBASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC3Q9BQI4 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms