Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 ASS1P1-201ENST00000402854 1237 ntBASIC13.83□□□□□ -0.2
VPS13AQ96RL7 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 AP000533.1-201ENST00000456143 1177 ntBASIC13.83□□□□□ -0.2
VPS13AQ96RL7 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 MIR6165-201ENST00000614803 84 ntBASIC13.83□□□□□ -0.2
VPS13AQ96RL7 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
VPS13AQ96RL7 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 AL009176.1-201ENST00000607876 650 ntBASIC13.82□□□□□ -0.2
VPS13AQ96RL7 PAX6-247ENST00000638965 979 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 USP39-220ENST00000613444 2161 ntTSL 2 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 PPP1R2P10-201ENST00000393023 595 ntBASIC13.82□□□□□ -0.2
VPS13AQ96RL7 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 HNRNPA1P72-201ENST00000529511 967 ntBASIC13.82□□□□□ -0.2
VPS13AQ96RL7 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 Z98885.3-201ENST00000624882 1757 ntBASIC13.82□□□□□ -0.2
VPS13AQ96RL7 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13AQ96RL7 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 CCNL2P1-201ENST00000512846 969 ntBASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AC127002.1-201ENST00000619123 455 ntBASIC13.81□□□□□ -0.2
VPS13AQ96RL7 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 CCND3P1-201ENST00000438347 580 ntBASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AC006001.2-202ENST00000439360 508 ntTSL 3 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 TPT1P11-201ENST00000458482 498 ntBASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 DKFZP434H168-201ENST00000567381 1905 ntBASIC13.81□□□□□ -0.2
VPS13AQ96RL7 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 MIR193A-201ENST00000384882 88 ntBASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 AC015818.3-201ENST00000583797 589 ntBASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms