Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 RAN-210ENST00000541630 1475 ntTSL 2 BASIC14.67□□□□□ -0.06
SHROOM3Q8TF72 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 AL928654.5-201ENST00000624831 2501 ntBASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 DPM3-202ENST00000368399 517 ntBASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 MIR769-201ENST00000390225 118 ntBASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 AC012441.2-201ENST00000444843 739 ntBASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 MAX-218ENST00000557746 571 ntTSL 4 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 AL645939.5-201ENST00000606834 243 ntBASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 AL353726.2-201ENST00000623259 884 ntBASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 AC015909.5-201ENST00000624336 2266 ntBASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 AC023794.5-201ENST00000564380 2157 ntBASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHROOM3Q8TF72 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 AC078875.1-201ENST00000431907 724 ntBASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 AC003686.1-201ENST00000550956 1034 ntBASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 KRT8P24-201ENST00000560290 1559 ntBASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC14.65□□□□□ -0.06
SHROOM3Q8TF72 UFM1-202ENST00000379649 846 ntTSL 4 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms