Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.95□□□□□ -0.18
COL28A1Q2UY09 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL28A1Q2UY09 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 LINC00552-201ENST00000625151 2579 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AL360270.3-201ENST00000609118 1348 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 REXO1L2P-201ENST00000425429 2069 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 COX20P1-201ENST00000366529 357 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AL357563.1-201ENST00000404728 395 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 FAM58BP-201ENST00000439056 645 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 IGHEP1-201ENST00000521393 651 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 DUX4L46-201ENST00000566845 751 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 LINC01783-202ENST00000614408 828 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 BX284668.2-205ENST00000619677 828 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AC025262.2-201ENST00000623975 1056 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AC138466.5-201ENST00000624002 808 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 AL157414.3-201ENST00000624276 1954 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 IL9RP3-201ENST00000442856 1674 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms