Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC11.74□□□□□ -0.53
LMO4P61968 AC004837.1-201ENST00000446267 564 ntBASIC11.74□□□□□ -0.53
LMO4P61968 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.74□□□□□ -0.53
LMO4P61968 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC11.74□□□□□ -0.53
LMO4P61968 AC068867.1-201ENST00000559855 150 ntBASIC11.74□□□□□ -0.53
LMO4P61968 AC145285.5-201ENST00000562217 361 ntBASIC11.74□□□□□ -0.53
LMO4P61968 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC11.74□□□□□ -0.53
LMO4P61968 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC11.74□□□□□ -0.53
LMO4P61968 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC11.74□□□□□ -0.53
LMO4P61968 AL132780.4-201ENST00000624870 1135 ntBASIC11.74□□□□□ -0.53
LMO4P61968 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC11.74□□□□□ -0.53
LMO4P61968 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
LMO4P61968 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC11.74□□□□□ -0.53
LMO4P61968 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC11.73□□□□□ -0.53
LMO4P61968 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 BANP-201ENST00000286122 2368 ntTSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
LMO4P61968 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC11.73□□□□□ -0.53
LMO4P61968 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 CELP-201ENST00000411440 1249 ntTSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
LMO4P61968 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC11.73□□□□□ -0.53
LMO4P61968 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
LMO4P61968 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 PIN4P1-201ENST00000451079 396 ntBASIC11.73□□□□□ -0.53
LMO4P61968 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 RN7SL788P-201ENST00000460504 316 ntBASIC11.73□□□□□ -0.53
LMO4P61968 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
LMO4P61968 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 RPS23-204ENST00000507980 836 ntTSL 2 BASIC11.73□□□□□ -0.53
LMO4P61968 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC11.73□□□□□ -0.53
LMO4P61968 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC11.73□□□□□ -0.53
LMO4P61968 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC11.73□□□□□ -0.53
LMO4P61968 AC015802.1-201ENST00000588104 1449 ntBASIC11.73□□□□□ -0.53
LMO4P61968 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC11.73□□□□□ -0.53
LMO4P61968 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 AC025271.4-201ENST00000621477 1726 ntBASIC11.73□□□□□ -0.53
LMO4P61968 AC009084.3-201ENST00000623356 437 ntBASIC11.73□□□□□ -0.53
LMO4P61968 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
LMO4P61968 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC11.73□□□□□ -0.53
LMO4P61968 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
LMO4P61968 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LMO4P61968 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms