Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
LIM2P55344 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.72□□□□□ -0.21
LIM2P55344 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 DPM3-202ENST00000368399 517 ntBASIC13.72□□□□□ -0.21
LIM2P55344 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.72□□□□□ -0.21
LIM2P55344 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.72□□□□□ -0.21
LIM2P55344 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.72□□□□□ -0.21
LIM2P55344 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.72□□□□□ -0.21
LIM2P55344 AC068587.8-201ENST00000641239 219 ntBASIC13.72□□□□□ -0.21
LIM2P55344 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
LIM2P55344 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 AC067750.1-201ENST00000608826 6545 ntBASIC13.72□□□□□ -0.21
LIM2P55344 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.71□□□□□ -0.21
LIM2P55344 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
LIM2P55344 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.71□□□□□ -0.21
LIM2P55344 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.71□□□□□ -0.21
LIM2P55344 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.71□□□□□ -0.21
LIM2P55344 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
LIM2P55344 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
LIM2P55344 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
LIM2P55344 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.71□□□□□ -0.21
LIM2P55344 AC104073.2-201ENST00000453737 312 ntBASIC13.71□□□□□ -0.21
LIM2P55344 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.71□□□□□ -0.21
LIM2P55344 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.71□□□□□ -0.21
LIM2P55344 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.71□□□□□ -0.21
LIM2P55344 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.71□□□□□ -0.21
LIM2P55344 AC124068.2-201ENST00000569473 1109 ntBASIC13.71□□□□□ -0.21
LIM2P55344 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.71□□□□□ -0.21
LIM2P55344 MIR4538-201ENST00000581377 78 ntBASIC13.71□□□□□ -0.21
LIM2P55344 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.71□□□□□ -0.21
LIM2P55344 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
LIM2P55344 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
LIM2P55344 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
LIM2P55344 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
LIM2P55344 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
LIM2P55344 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LIM2P55344 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
LIM2P55344 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
LIM2P55344 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.71□□□□□ -0.22
LIM2P55344 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LIM2P55344 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
LIM2P55344 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LIM2P55344 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LIM2P55344 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.7□□□□□ -0.22
LIM2P55344 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.7□□□□□ -0.22
LIM2P55344 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
LIM2P55344 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.7□□□□□ -0.22
LIM2P55344 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.7□□□□□ -0.22
LIM2P55344 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.7□□□□□ -0.22
LIM2P55344 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LIM2P55344 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms