Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 PGF-202ENST00000405431 666 ntTSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC11.94□□□□□ -0.5
CDX1P47902 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC11.94□□□□□ -0.5
CDX1P47902 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 BCRP2-202ENST00000447763 634 ntBASIC11.94□□□□□ -0.5
CDX1P47902 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 BCRP6-201ENST00000510112 632 ntBASIC11.94□□□□□ -0.5
CDX1P47902 BCRP7-201ENST00000511549 544 ntBASIC11.94□□□□□ -0.5
CDX1P47902 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC11.94□□□□□ -0.5
CDX1P47902 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
CDX1P47902 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
CDX1P47902 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
CDX1P47902 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC11.94□□□□□ -0.5
CDX1P47902 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC11.94□□□□□ -0.5
CDX1P47902 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CDX1P47902 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC11.93□□□□□ -0.5
CDX1P47902 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 FES-203ENST00000394302 2133 ntTSL 5 BASIC11.93□□□□□ -0.5
CDX1P47902 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
CDX1P47902 AMT-224ENST00000635808 1610 ntTSL 5 BASIC11.93□□□□□ -0.5
CDX1P47902 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 TBC1D3P2-203ENST00000581291 2088 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC11.93□□□□□ -0.5
CDX1P47902 VENTXP1-201ENST00000569334 2716 ntBASIC11.93□□□□□ -0.5
CDX1P47902 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
CDX1P47902 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC11.93□□□□□ -0.5
CDX1P47902 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC11.93□□□□□ -0.5
CDX1P47902 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 AC016694.1-201ENST00000434179 700 ntBASIC11.93□□□□□ -0.5
CDX1P47902 AC022210.1-201ENST00000449856 793 ntBASIC11.93□□□□□ -0.5
CDX1P47902 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
CDX1P47902 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 AC104989.1-201ENST00000519711 778 ntBASIC11.93□□□□□ -0.5
CDX1P47902 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC11.93□□□□□ -0.5
CDX1P47902 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC11.93□□□□□ -0.5
CDX1P47902 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC11.93□□□□□ -0.5
CDX1P47902 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC11.93□□□□□ -0.5
CDX1P47902 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
CDX1P47902 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC11.93□□□□□ -0.5
CDX1P47902 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC11.93□□□□□ -0.5
CDX1P47902 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
CDX1P47902 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
CDX1P47902 AP000845.1-201ENST00000581677 2131 ntBASIC11.93□□□□□ -0.5
CDX1P47902 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CDX1P47902 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC11.93□□□□□ -0.5
CDX1P47902 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms