Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CUX1P39880 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC23.31■■□□□ 1.32
CUX1P39880 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC23.3■■□□□ 1.32
CUX1P39880 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CUX1P39880 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC23.3■■□□□ 1.32
CUX1P39880 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC23.3■■□□□ 1.32
CUX1P39880 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC23.3■■□□□ 1.32
CUX1P39880 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CUX1P39880 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CUX1P39880 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC23.3■■□□□ 1.32
CUX1P39880 OR7E155P-201ENST00000412208 1014 ntBASIC23.3■■□□□ 1.32
CUX1P39880 AL773545.2-201ENST00000442149 472 ntBASIC23.3■■□□□ 1.32
CUX1P39880 RPSAP70-201ENST00000504462 864 ntBASIC23.3■■□□□ 1.32
CUX1P39880 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC23.3■■□□□ 1.32
CUX1P39880 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC23.3■■□□□ 1.32
CUX1P39880 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CUX1P39880 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC23.3■■□□□ 1.32
CUX1P39880 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC23.3■■□□□ 1.32
CUX1P39880 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC23.3■■□□□ 1.32
CUX1P39880 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
CUX1P39880 PRR20FP-201ENST00000603320 180 ntBASIC23.3■■□□□ 1.32
CUX1P39880 AC004466.2-201ENST00000614749 516 ntBASIC23.3■■□□□ 1.32
CUX1P39880 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CUX1P39880 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CUX1P39880 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
CUX1P39880 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CUX1P39880 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC23.3■■□□□ 1.32
CUX1P39880 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC23.3■■□□□ 1.32
CUX1P39880 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CUX1P39880 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
CUX1P39880 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CUX1P39880 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC23.3■■□□□ 1.32
CUX1P39880 AC113367.3-201ENST00000508316 1912 ntBASIC23.3■■□□□ 1.32
CUX1P39880 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC23.3■■□□□ 1.32
CUX1P39880 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CUX1P39880 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
CUX1P39880 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
CUX1P39880 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
CUX1P39880 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC23.29■■□□□ 1.32
CUX1P39880 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC23.29■■□□□ 1.32
CUX1P39880 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 RN7SL524P-201ENST00000581152 300 ntBASIC23.29■■□□□ 1.32
CUX1P39880 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC23.29■■□□□ 1.32
CUX1P39880 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC23.29■■□□□ 1.32
CUX1P39880 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC23.29■■□□□ 1.32
CUX1P39880 STK16-202ENST00000409260 1493 ntTSL 5 BASIC23.29■■□□□ 1.32
CUX1P39880 RCC2P1-201ENST00000452257 1476 ntBASIC23.29■■□□□ 1.32
CUX1P39880 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC23.29■■□□□ 1.32
CUX1P39880 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC23.29■■□□□ 1.32
CUX1P39880 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC23.29■■□□□ 1.32
CUX1P39880 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC23.29■■□□□ 1.32
CUX1P39880 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC23.29■■□□□ 1.32
CUX1P39880 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CUX1P39880 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC23.28■■□□□ 1.32
CUX1P39880 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC23.28■■□□□ 1.32
CUX1P39880 MAGEA7P-201ENST00000436482 942 ntBASIC23.28■■□□□ 1.32
CUX1P39880 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC23.28■■□□□ 1.32
CUX1P39880 AC011431.1-201ENST00000512971 230 ntBASIC23.28■■□□□ 1.32
CUX1P39880 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC23.28■■□□□ 1.32
CUX1P39880 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC23.28■■□□□ 1.32
CUX1P39880 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC23.28■■□□□ 1.32
CUX1P39880 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
CUX1P39880 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
CUX1P39880 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
CUX1P39880 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC23.28■■□□□ 1.32
CUX1P39880 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
CUX1P39880 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC23.28■■□□□ 1.32
CUX1P39880 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC23.28■■□□□ 1.32
CUX1P39880 KRT18P44-201ENST00000416086 1285 ntBASIC23.28■■□□□ 1.32
CUX1P39880 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC23.28■■□□□ 1.32
CUX1P39880 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC23.28■■□□□ 1.32
CUX1P39880 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CUX1P39880 MIR5091-201ENST00000578707 93 ntBASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms