Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN1P35523 SLC28A1-203ENST00000394573 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN1P35523 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.52■□□□□ 0.24
CLCN1P35523 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN1P35523 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC16.52■□□□□ 0.24
CLCN1P35523 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN1P35523 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN1P35523 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.52■□□□□ 0.24
CLCN1P35523 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN1P35523 AL512638.1-201ENST00000457493 794 ntBASIC16.52■□□□□ 0.24
CLCN1P35523 CYMP-203ENST00000474680 1263 ntBASIC16.52■□□□□ 0.24
CLCN1P35523 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.52■□□□□ 0.24
CLCN1P35523 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.52■□□□□ 0.24
CLCN1P35523 AC104794.3-201ENST00000566840 1248 ntBASIC16.52■□□□□ 0.24
CLCN1P35523 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.52■□□□□ 0.24
CLCN1P35523 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.52■□□□□ 0.24
CLCN1P35523 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC16.52■□□□□ 0.24
CLCN1P35523 POMT1-203ENST00000372228 3123 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLCN1P35523 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLCN1P35523 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLCN1P35523 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLCN1P35523 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLCN1P35523 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CLCN1P35523 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
CLCN1P35523 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
CLCN1P35523 AC026271.4-201ENST00000578214 1833 ntBASIC16.52■□□□□ 0.23
CLCN1P35523 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CLCN1P35523 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 DFFB-205ENST00000378209 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 CTCFL-218ENST00000608440 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 OSBPL2-203ENST00000439951 3886 ntTSL 5 BASIC16.51■□□□□ 0.23
CLCN1P35523 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CLCN1P35523 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.51■□□□□ 0.23
CLCN1P35523 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.51■□□□□ 0.23
CLCN1P35523 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.51■□□□□ 0.23
CLCN1P35523 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.51■□□□□ 0.23
CLCN1P35523 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.51■□□□□ 0.23
CLCN1P35523 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.51■□□□□ 0.23
CLCN1P35523 GAPDHP40-201ENST00000505218 1006 ntBASIC16.51■□□□□ 0.23
CLCN1P35523 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.51■□□□□ 0.23
CLCN1P35523 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.51■□□□□ 0.23
CLCN1P35523 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.51■□□□□ 0.23
CLCN1P35523 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.51■□□□□ 0.23
CLCN1P35523 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.51■□□□□ 0.23
CLCN1P35523 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.51■□□□□ 0.23
CLCN1P35523 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.51■□□□□ 0.23
CLCN1P35523 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 ALDH1L1-205ENST00000452905 2758 ntTSL 2 BASIC16.51■□□□□ 0.23
CLCN1P35523 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 BEND6-202ENST00000370746 2379 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CLCN1P35523 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CLCN1P35523 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CLCN1P35523 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLCN1P35523 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
CLCN1P35523 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC16.5■□□□□ 0.23
CLCN1P35523 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC16.5■□□□□ 0.23
CLCN1P35523 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 ZNF197-204ENST00000383745 2935 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CLCN1P35523 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC16.5■□□□□ 0.23
CLCN1P35523 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.5■□□□□ 0.23
CLCN1P35523 UGT1A2P-201ENST00000454886 866 ntBASIC16.5■□□□□ 0.23
CLCN1P35523 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.5■□□□□ 0.23
CLCN1P35523 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
CLCN1P35523 AC023310.3-201ENST00000557027 670 ntBASIC16.5■□□□□ 0.23
CLCN1P35523 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
CLCN1P35523 AC100756.1-201ENST00000562736 682 ntBASIC16.5■□□□□ 0.23
CLCN1P35523 AC138749.3-201ENST00000567691 622 ntBASIC16.5■□□□□ 0.23
CLCN1P35523 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.5■□□□□ 0.23
CLCN1P35523 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.5■□□□□ 0.23
CLCN1P35523 AC116165.1-201ENST00000611806 668 ntBASIC16.5■□□□□ 0.23
CLCN1P35523 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.5■□□□□ 0.23
CLCN1P35523 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CLCN1P35523 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 GHET1-201ENST00000627071 1906 ntBASIC16.5■□□□□ 0.23
CLCN1P35523 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.5■□□□□ 0.23
CLCN1P35523 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLCN1P35523 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms