Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
BDNFP23560 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.21■□□□□ 0.03
BDNFP23560 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC15.21■□□□□ 0.03
BDNFP23560 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC15.21■□□□□ 0.03
BDNFP23560 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC15.21■□□□□ 0.03
BDNFP23560 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.21■□□□□ 0.03
BDNFP23560 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC15.21■□□□□ 0.03
BDNFP23560 RN7SL258P-201ENST00000478664 300 ntBASIC15.21■□□□□ 0.03
BDNFP23560 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 IGLV3-15-201ENST00000518356 244 ntBASIC15.21■□□□□ 0.03
BDNFP23560 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
BDNFP23560 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC15.21■□□□□ 0.03
BDNFP23560 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC15.21■□□□□ 0.03
BDNFP23560 AC079328.1-201ENST00000560358 952 ntBASIC15.21■□□□□ 0.03
BDNFP23560 STUB1-204ENST00000564370 875 ntTSL 2 BASIC15.21■□□□□ 0.03
BDNFP23560 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.03
BDNFP23560 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC15.21■□□□□ 0.03
BDNFP23560 AC007718.1-201ENST00000621078 280 ntBASIC15.21■□□□□ 0.03
BDNFP23560 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC15.21■□□□□ 0.03
BDNFP23560 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
BDNFP23560 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.21■□□□□ 0.03
BDNFP23560 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
BDNFP23560 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
BDNFP23560 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.21■□□□□ 0.02
BDNFP23560 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC15.21■□□□□ 0.02
BDNFP23560 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
BDNFP23560 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
BDNFP23560 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
BDNFP23560 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.2■□□□□ 0.02
BDNFP23560 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.2■□□□□ 0.02
BDNFP23560 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
BDNFP23560 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
BDNFP23560 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
BDNFP23560 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC15.2■□□□□ 0.02
BDNFP23560 RPS9P1-201ENST00000419943 583 ntBASIC15.2■□□□□ 0.02
BDNFP23560 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.2■□□□□ 0.02
BDNFP23560 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC15.2■□□□□ 0.02
BDNFP23560 AC234782.1-201ENST00000451950 919 ntBASIC15.2■□□□□ 0.02
BDNFP23560 CEP164P1-201ENST00000455142 418 ntBASIC15.2■□□□□ 0.02
BDNFP23560 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC15.2■□□□□ 0.02
BDNFP23560 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.2■□□□□ 0.02
BDNFP23560 PHBP15-201ENST00000574228 665 ntBASIC15.2■□□□□ 0.02
BDNFP23560 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
BDNFP23560 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
BDNFP23560 AC084346.2-201ENST00000607097 949 ntBASIC15.2■□□□□ 0.02
BDNFP23560 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC15.2■□□□□ 0.02
BDNFP23560 AC006453.1-201ENST00000636037 1257 ntBASIC15.2■□□□□ 0.02
BDNFP23560 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
BDNFP23560 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 AC026748.1-201ENST00000624349 3251 ntBASIC15.2■□□□□ 0.02
BDNFP23560 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.2■□□□□ 0.02
BDNFP23560 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.2■□□□□ 0.02
BDNFP23560 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
BDNFP23560 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
BDNFP23560 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
BDNFP23560 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.2■□□□□ 0.02
BDNFP23560 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
BDNFP23560 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
BDNFP23560 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.19■□□□□ 0.02
BDNFP23560 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms