Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC14.06□□□□□ -0.16
TNFP01375 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.06□□□□□ -0.16
TNFP01375 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TNFP01375 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.05□□□□□ -0.16
TNFP01375 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.05□□□□□ -0.16
TNFP01375 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
TNFP01375 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.05□□□□□ -0.16
TNFP01375 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.05□□□□□ -0.16
TNFP01375 RN7SL832P-201ENST00000607781 1756 ntBASIC14.05□□□□□ -0.16
TNFP01375 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
TNFP01375 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC14.05□□□□□ -0.16
TNFP01375 RPL7P35-201ENST00000446943 740 ntBASIC14.05□□□□□ -0.16
TNFP01375 RN7SL81P-201ENST00000493781 261 ntBASIC14.05□□□□□ -0.16
TNFP01375 IQSEC3P1-201ENST00000538799 536 ntBASIC14.05□□□□□ -0.16
TNFP01375 WDR7-208ENST00000589935 544 ntTSL 4 BASIC14.05□□□□□ -0.16
TNFP01375 AC138894.2-201ENST00000602838 371 ntBASIC14.05□□□□□ -0.16
TNFP01375 MIR7845-201ENST00000618396 99 ntBASIC14.05□□□□□ -0.16
TNFP01375 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
TNFP01375 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.05□□□□□ -0.16
TNFP01375 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.05□□□□□ -0.16
TNFP01375 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
TNFP01375 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TNFP01375 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC14.05□□□□□ -0.16
TNFP01375 AC011498.7-201ENST00000624986 2027 ntBASIC14.05□□□□□ -0.16
TNFP01375 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.05□□□□□ -0.16
TNFP01375 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.04□□□□□ -0.16
TNFP01375 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.04□□□□□ -0.16
TNFP01375 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.04□□□□□ -0.16
TNFP01375 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
TNFP01375 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC14.04□□□□□ -0.16
TNFP01375 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 OR8T1P-201ENST00000421347 918 ntBASIC14.04□□□□□ -0.16
TNFP01375 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC14.04□□□□□ -0.16
TNFP01375 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.04□□□□□ -0.16
TNFP01375 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC14.04□□□□□ -0.16
TNFP01375 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC14.04□□□□□ -0.16
TNFP01375 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC14.04□□□□□ -0.16
TNFP01375 AC087045.2-201ENST00000606279 1003 ntBASIC14.04□□□□□ -0.16
TNFP01375 AC242376.2-201ENST00000619355 883 ntBASIC14.04□□□□□ -0.16
TNFP01375 SNX1-214ENST00000625244 324 ntTSL 5 BASIC14.04□□□□□ -0.16
TNFP01375 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 TEKT4P2-202ENST00000559466 1312 ntBASIC14.04□□□□□ -0.16
TNFP01375 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.04□□□□□ -0.16
TNFP01375 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
TNFP01375 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
TNFP01375 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TNFP01375 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
TNFP01375 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.04□□□□□ -0.16
TNFP01375 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.03□□□□□ -0.16
TNFP01375 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TNFP01375 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
TNFP01375 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.03□□□□□ -0.16
TNFP01375 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.03□□□□□ -0.16
TNFP01375 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms