Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX2-2O95096 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX2-2O95096 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
NKX2-2O95096 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX2-2O95096 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
NKX2-2O95096 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
NKX2-2O95096 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.31□□□□□ -0.28
NKX2-2O95096 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
NKX2-2O95096 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
NKX2-2O95096 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.3□□□□□ -0.28
NKX2-2O95096 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
NKX2-2O95096 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.3□□□□□ -0.28
NKX2-2O95096 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX2-2O95096 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
NKX2-2O95096 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.3□□□□□ -0.28
NKX2-2O95096 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.3□□□□□ -0.28
NKX2-2O95096 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX2-2O95096 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC13.3□□□□□ -0.28
NKX2-2O95096 AC009779.1-201ENST00000551138 283 ntBASIC13.3□□□□□ -0.28
NKX2-2O95096 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.3□□□□□ -0.28
NKX2-2O95096 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.3□□□□□ -0.28
NKX2-2O95096 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
NKX2-2O95096 AL132994.2-201ENST00000603120 687 ntBASIC13.3□□□□□ -0.28
NKX2-2O95096 AL008721.1-201ENST00000609964 604 ntBASIC13.3□□□□□ -0.28
NKX2-2O95096 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
NKX2-2O95096 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
NKX2-2O95096 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC13.3□□□□□ -0.28
NKX2-2O95096 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX2-2O95096 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
NKX2-2O95096 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX2-2O95096 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.3□□□□□ -0.28
NKX2-2O95096 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
NKX2-2O95096 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.3□□□□□ -0.28
NKX2-2O95096 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.3□□□□□ -0.28
NKX2-2O95096 AC007326.2-201ENST00000624224 7579 ntBASIC13.3□□□□□ -0.28
NKX2-2O95096 AC023794.5-201ENST00000564380 2157 ntBASIC13.3□□□□□ -0.28
NKX2-2O95096 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 CSH2-202ENST00000345366 598 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 AC103592.1-201ENST00000394513 664 ntBASIC13.29□□□□□ -0.28
NKX2-2O95096 MIR1908-201ENST00000410394 80 ntBASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms