Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.64■□□□□ 0.73
NPHP4O75161 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
NPHP4O75161 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.64■□□□□ 0.73
NPHP4O75161 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
NPHP4O75161 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 OR7E12P-201ENST00000344740 973 ntBASIC19.64■□□□□ 0.73
NPHP4O75161 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
NPHP4O75161 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC19.64■□□□□ 0.73
NPHP4O75161 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC19.64■□□□□ 0.73
NPHP4O75161 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
NPHP4O75161 CA5BP1-205ENST00000435806 1064 ntBASIC19.64■□□□□ 0.73
NPHP4O75161 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC19.64■□□□□ 0.73
NPHP4O75161 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC19.64■□□□□ 0.73
NPHP4O75161 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC19.64■□□□□ 0.73
NPHP4O75161 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC19.64■□□□□ 0.73
NPHP4O75161 MIR6074-201ENST00000612054 107 ntBASIC19.64■□□□□ 0.73
NPHP4O75161 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
NPHP4O75161 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC19.64■□□□□ 0.73
NPHP4O75161 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
NPHP4O75161 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP4O75161 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP4O75161 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
NPHP4O75161 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.63■□□□□ 0.73
NPHP4O75161 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP4O75161 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP4O75161 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
NPHP4O75161 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 RFNG-202ENST00000429557 994 ntTSL 5 BASIC19.63■□□□□ 0.73
NPHP4O75161 AC092865.2-201ENST00000439409 971 ntBASIC19.63■□□□□ 0.73
NPHP4O75161 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC19.63■□□□□ 0.73
NPHP4O75161 AC134878.2-201ENST00000620700 1265 ntBASIC19.63■□□□□ 0.73
NPHP4O75161 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC19.63■□□□□ 0.73
NPHP4O75161 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
NPHP4O75161 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
NPHP4O75161 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP4O75161 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 AL354702.1-201ENST00000442006 1960 ntBASIC19.63■□□□□ 0.73
NPHP4O75161 AC068760.1-201ENST00000493579 1953 ntBASIC19.63■□□□□ 0.73
NPHP4O75161 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP4O75161 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
NPHP4O75161 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP4O75161 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP4O75161 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
NPHP4O75161 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP4O75161 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
NPHP4O75161 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
NPHP4O75161 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP4O75161 PTN-202ENST00000393083 1599 ntTSL 5 BASIC19.62■□□□□ 0.73
NPHP4O75161 WDR54-202ENST00000409791 854 ntTSL 3 BASIC19.62■□□□□ 0.73
NPHP4O75161 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC19.62■□□□□ 0.73
NPHP4O75161 AC005722.1-201ENST00000431878 964 ntBASIC19.62■□□□□ 0.73
NPHP4O75161 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP4O75161 ALDOAP1-201ENST00000491506 1078 ntBASIC19.62■□□□□ 0.73
NPHP4O75161 AL450346.2-201ENST00000495602 1024 ntBASIC19.62■□□□□ 0.73
NPHP4O75161 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP4O75161 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
NPHP4O75161 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC19.62■□□□□ 0.73
NPHP4O75161 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP4O75161 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP4O75161 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
NPHP4O75161 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPHP4O75161 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.62■□□□□ 0.73
NPHP4O75161 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
NPHP4O75161 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.62■□□□□ 0.73
NPHP4O75161 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC19.62■□□□□ 0.73
NPHP4O75161 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.61■□□□□ 0.73
NPHP4O75161 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
NPHP4O75161 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP4O75161 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms