Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 AL139094.1-201ENST00000405549 1188 ntBASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 AP001160.2-201ENST00000596071 487 ntBASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 AL391069.4-201ENST00000609583 481 ntBASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 INTS4P2-202ENST00000614726 2019 ntBASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 INE2-201ENST00000630399 1874 ntBASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 SALL4P5-201ENST00000419001 1760 ntBASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 KRT18P28-201ENST00000453838 1332 ntBASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 BCAS4-202ENST00000371608 6680 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 RPS15-201ENST00000233609 534 ntTSL 2 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 SPDYE19P-201ENST00000338590 713 ntBASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 C1QBPP1-201ENST00000400117 770 ntBASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC004945.1-201ENST00000416738 983 ntBASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 MEP1AP4-201ENST00000423244 1087 ntBASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC007969.1-201ENST00000433675 447 ntBASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC023310.3-201ENST00000557027 670 ntBASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 RPL28-205ENST00000558131 444 ntTSL 5 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC100756.1-201ENST00000562736 682 ntBASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC138749.3-201ENST00000567691 622 ntBASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 RPS15-205ENST00000586686 562 ntTSL 5 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC116165.1-201ENST00000611806 668 ntBASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 ZNF621-202ENST00000339296 6378 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AC019294.4-201ENST00000561777 2905 ntBASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 ADAMTS9-210ENST00000498707 7624 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
CHMP1AQ9HD42 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms