Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 USP17L7-201ENST00000530447 2022 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28BQ9BUN5 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 ACKR1-201ENST00000368121 1240 ntBASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 GNAQP1-201ENST00000444815 1067 ntBASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 AC004890.2-204ENST00000481968 304 ntBASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 AL359711.2-201ENST00000563105 872 ntBASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 AC099568.2-201ENST00000609194 695 ntBASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 AC008761.3-201ENST00000624803 892 ntBASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 AC009474.1-201ENST00000455096 1565 ntBASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 CLUHP2-201ENST00000426660 1303 ntBASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28BQ9BUN5 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 SPDYE19P-201ENST00000338590 713 ntBASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 DNAJB3-202ENST00000449667 1266 ntBASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 KRT18P25-201ENST00000508931 1278 ntBASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 MIR8072-201ENST00000614241 80 ntBASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 GOLGA2P5-201ENST00000266746 2395 ntBASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
CCDC28BQ9BUN5 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms