Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCNA1P78396 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCNA1P78396 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCNA1P78396 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.3■□□□□ 0.2
CCNA1P78396 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCNA1P78396 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCNA1P78396 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
CCNA1P78396 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCNA1P78396 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.29■□□□□ 0.2
CCNA1P78396 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.29■□□□□ 0.2
CCNA1P78396 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCNA1P78396 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC16.29■□□□□ 0.2
CCNA1P78396 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
CCNA1P78396 AC022532.1-201ENST00000624563 1728 ntBASIC16.29■□□□□ 0.2
CCNA1P78396 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 AC234644.1-201ENST00000406065 370 ntBASIC16.29■□□□□ 0.2
CCNA1P78396 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 CHCHD2P2-201ENST00000503744 321 ntBASIC16.29■□□□□ 0.2
CCNA1P78396 NAA40-205ENST00000539656 577 ntTSL 4 BASIC16.29■□□□□ 0.2
CCNA1P78396 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC16.29■□□□□ 0.2
CCNA1P78396 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC16.29■□□□□ 0.2
CCNA1P78396 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC16.29■□□□□ 0.2
CCNA1P78396 AC055811.3-201ENST00000584952 686 ntBASIC16.29■□□□□ 0.2
CCNA1P78396 AP005264.6-204ENST00000588436 719 ntBASIC16.29■□□□□ 0.2
CCNA1P78396 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC16.29■□□□□ 0.2
CCNA1P78396 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC16.29■□□□□ 0.2
CCNA1P78396 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC16.29■□□□□ 0.2
CCNA1P78396 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.29■□□□□ 0.2
CCNA1P78396 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CCNA1P78396 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
CCNA1P78396 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCNA1P78396 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
CCNA1P78396 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.29■□□□□ 0.2
CCNA1P78396 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCNA1P78396 AC215219.1-201ENST00000400706 1817 ntBASIC16.29■□□□□ 0.2
CCNA1P78396 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
CCNA1P78396 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC16.28■□□□□ 0.2
CCNA1P78396 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCNA1P78396 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 RN7SL375P-201ENST00000492442 298 ntBASIC16.28■□□□□ 0.2
CCNA1P78396 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC16.28■□□□□ 0.2
CCNA1P78396 FAM86B3P-203ENST00000523992 854 ntBASIC16.28■□□□□ 0.2
CCNA1P78396 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC16.28■□□□□ 0.2
CCNA1P78396 KLF17P1-201ENST00000547105 1126 ntBASIC16.28■□□□□ 0.2
CCNA1P78396 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC16.28■□□□□ 0.2
CCNA1P78396 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC16.28■□□□□ 0.2
CCNA1P78396 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.28■□□□□ 0.2
CCNA1P78396 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.28■□□□□ 0.2
CCNA1P78396 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
CCNA1P78396 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCNA1P78396 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCNA1P78396 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCNA1P78396 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCNA1P78396 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCNA1P78396 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCNA1P78396 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.27■□□□□ 0.2
CCNA1P78396 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms