Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCPP55072 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCPP55072 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
VCPP55072 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VCPP55072 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
VCPP55072 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.56■□□□□ 0.08
VCPP55072 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VCPP55072 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
VCPP55072 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VCPP55072 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.55■□□□□ 0.08
VCPP55072 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.55■□□□□ 0.08
VCPP55072 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VCPP55072 C8orf49-201ENST00000525043 1968 ntBASIC15.55■□□□□ 0.08
VCPP55072 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
VCPP55072 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.55■□□□□ 0.08
VCPP55072 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.55■□□□□ 0.08
VCPP55072 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VCPP55072 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC15.55■□□□□ 0.08
VCPP55072 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC15.55■□□□□ 0.08
VCPP55072 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.55■□□□□ 0.08
VCPP55072 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.55■□□□□ 0.08
VCPP55072 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC15.55■□□□□ 0.08
VCPP55072 BNIP3P13-201ENST00000599968 566 ntBASIC15.55■□□□□ 0.08
VCPP55072 ZACNP1-201ENST00000612259 710 ntBASIC15.55■□□□□ 0.08
VCPP55072 MIR6842-201ENST00000612539 65 ntBASIC15.55■□□□□ 0.08
VCPP55072 AC004923.1-202ENST00000642106 209 ntBASIC15.55■□□□□ 0.08
VCPP55072 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
VCPP55072 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCPP55072 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
VCPP55072 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VCPP55072 INE2-201ENST00000630399 1874 ntBASIC15.54■□□□□ 0.08
VCPP55072 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.54■□□□□ 0.08
VCPP55072 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.54■□□□□ 0.08
VCPP55072 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
VCPP55072 AC041040.2-201ENST00000622926 2899 ntBASIC15.54■□□□□ 0.08
VCPP55072 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.54■□□□□ 0.08
VCPP55072 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.54■□□□□ 0.08
VCPP55072 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
VCPP55072 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC15.54■□□□□ 0.08
VCPP55072 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.54■□□□□ 0.08
VCPP55072 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 ISCA2P1-201ENST00000425548 448 ntBASIC15.54■□□□□ 0.08
VCPP55072 AC242376.1-201ENST00000559033 726 ntBASIC15.54■□□□□ 0.08
VCPP55072 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
VCPP55072 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.54■□□□□ 0.08
VCPP55072 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
VCPP55072 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.54■□□□□ 0.08
VCPP55072 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
VCPP55072 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
VCPP55072 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 AL928921.2-201ENST00000641325 2442 ntBASIC15.54■□□□□ 0.08
VCPP55072 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms