Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SCN4AP35499 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SCN4AP35499 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 AC011477.7-201ENST00000617163 1440 ntBASIC16.46■□□□□ 0.23
SCN4AP35499 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SCN4AP35499 AL590824.1-201ENST00000403828 1349 ntBASIC16.46■□□□□ 0.23
SCN4AP35499 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SCN4AP35499 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
SCN4AP35499 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
SCN4AP35499 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SCN4AP35499 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC16.46■□□□□ 0.23
SCN4AP35499 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC16.46■□□□□ 0.23
SCN4AP35499 AC004910.1-201ENST00000433493 787 ntBASIC16.46■□□□□ 0.23
SCN4AP35499 AC092865.2-201ENST00000439409 971 ntBASIC16.46■□□□□ 0.23
SCN4AP35499 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC16.46■□□□□ 0.23
SCN4AP35499 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC16.46■□□□□ 0.23
SCN4AP35499 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC16.46■□□□□ 0.23
SCN4AP35499 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC16.46■□□□□ 0.23
SCN4AP35499 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC16.46■□□□□ 0.23
SCN4AP35499 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SCN4AP35499 SIGLEC20P-201ENST00000595243 1311 ntBASIC16.46■□□□□ 0.23
SCN4AP35499 STK16-202ENST00000409260 1493 ntTSL 5 BASIC16.46■□□□□ 0.22
SCN4AP35499 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC16.46■□□□□ 0.22
SCN4AP35499 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.22
SCN4AP35499 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SCN4AP35499 AC079325.1-201ENST00000430386 857 ntBASIC16.45■□□□□ 0.22
SCN4AP35499 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
SCN4AP35499 CA5BP1-205ENST00000435806 1064 ntBASIC16.45■□□□□ 0.22
SCN4AP35499 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SCN4AP35499 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC16.45■□□□□ 0.22
SCN4AP35499 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
SCN4AP35499 ABCD1P3-201ENST00000562927 605 ntBASIC16.45■□□□□ 0.22
SCN4AP35499 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC16.45■□□□□ 0.22
SCN4AP35499 NAT9-204ENST00000578822 839 ntTSL 3 BASIC16.45■□□□□ 0.22
SCN4AP35499 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC16.45■□□□□ 0.22
SCN4AP35499 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SCN4AP35499 AC136475.7-201ENST00000602949 592 ntBASIC16.45■□□□□ 0.22
SCN4AP35499 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
SCN4AP35499 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC16.45■□□□□ 0.22
SCN4AP35499 PTN-202ENST00000393083 1599 ntTSL 5 BASIC16.45■□□□□ 0.22
SCN4AP35499 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC16.45■□□□□ 0.22
SCN4AP35499 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 SFPQP1-201ENST00000446621 1786 ntBASIC16.45■□□□□ 0.22
SCN4AP35499 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SCN4AP35499 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.45■□□□□ 0.22
SCN4AP35499 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 USP17L6P-201ENST00000382470 1197 ntBASIC16.45■□□□□ 0.22
SCN4AP35499 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC16.45■□□□□ 0.22
SCN4AP35499 SDCBP2P1-201ENST00000416115 614 ntBASIC16.45■□□□□ 0.22
SCN4AP35499 IQCF4-203ENST00000428561 420 ntBASIC16.45■□□□□ 0.22
SCN4AP35499 RBM14-205ENST00000443702 732 ntTSL 3 BASIC16.45■□□□□ 0.22
SCN4AP35499 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC16.45■□□□□ 0.22
SCN4AP35499 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC16.45■□□□□ 0.22
SCN4AP35499 RNF7-205ENST00000480908 782 ntTSL 4 BASIC16.45■□□□□ 0.22
SCN4AP35499 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
SCN4AP35499 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC16.45■□□□□ 0.22
SCN4AP35499 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCN4AP35499 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.44■□□□□ 0.22
SCN4AP35499 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.44■□□□□ 0.22
SCN4AP35499 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SCN4AP35499 AC097474.1-201ENST00000506481 1371 ntBASIC16.44■□□□□ 0.22
SCN4AP35499 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SCN4AP35499 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SCN4AP35499 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms