Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.06□□□□□ -0.32
SPTA1P02549 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
SPTA1P02549 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
SPTA1P02549 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC13.06□□□□□ -0.32
SPTA1P02549 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
SPTA1P02549 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13.06□□□□□ -0.32
SPTA1P02549 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.06□□□□□ -0.32
SPTA1P02549 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 AGGF1P1-201ENST00000509500 2073 ntBASIC13.06□□□□□ -0.32
SPTA1P02549 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.06□□□□□ -0.32
SPTA1P02549 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.06□□□□□ -0.32
SPTA1P02549 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 BID-213ENST00000615414 2236 ntTSL 5 BASIC13.06□□□□□ -0.32
SPTA1P02549 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
SPTA1P02549 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 GUSBP10-201ENST00000417412 665 ntBASIC13.06□□□□□ -0.32
SPTA1P02549 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC13.06□□□□□ -0.32
SPTA1P02549 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC13.06□□□□□ -0.32
SPTA1P02549 AC010632.2-201ENST00000588369 1224 ntBASIC13.06□□□□□ -0.32
SPTA1P02549 AC080013.5-201ENST00000607044 679 ntBASIC13.06□□□□□ -0.32
SPTA1P02549 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC13.06□□□□□ -0.32
SPTA1P02549 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.06□□□□□ -0.32
SPTA1P02549 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.06□□□□□ -0.32
SPTA1P02549 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC13.06□□□□□ -0.32
SPTA1P02549 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 STX3-207ENST00000633708 3111 ntTSL 5 BASIC13.06□□□□□ -0.32
SPTA1P02549 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC13.06□□□□□ -0.32
SPTA1P02549 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
SPTA1P02549 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SPTA1P02549 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
SPTA1P02549 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC13.05□□□□□ -0.32
SPTA1P02549 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC13.05□□□□□ -0.32
SPTA1P02549 AC136604.1-202ENST00000425471 771 ntBASIC13.05□□□□□ -0.32
SPTA1P02549 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC13.05□□□□□ -0.32
SPTA1P02549 RN7SL602P-201ENST00000578326 324 ntBASIC13.05□□□□□ -0.32
SPTA1P02549 RN7SL718P-201ENST00000581254 303 ntBASIC13.05□□□□□ -0.32
SPTA1P02549 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC13.05□□□□□ -0.32
SPTA1P02549 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 AC009093.10-201ENST00000641956 1442 ntBASIC13.05□□□□□ -0.32
SPTA1P02549 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.05□□□□□ -0.32
SPTA1P02549 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
SPTA1P02549 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC13.05□□□□□ -0.32
SPTA1P02549 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.05□□□□□ -0.32
SPTA1P02549 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 PTGER4P2-201ENST00000328411 252 ntBASIC13.05□□□□□ -0.32
SPTA1P02549 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
SPTA1P02549 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
SPTA1P02549 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 CASP2-203ENST00000392925 616 ntTSL 3 BASIC13.05□□□□□ -0.32
SPTA1P02549 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC13.05□□□□□ -0.32
SPTA1P02549 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC13.05□□□□□ -0.32
SPTA1P02549 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.05□□□□□ -0.32
SPTA1P02549 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 PTGER4P3-201ENST00000458150 252 ntBASIC13.05□□□□□ -0.32
SPTA1P02549 RN7SL277P-201ENST00000481521 288 ntBASIC13.05□□□□□ -0.32
SPTA1P02549 ALG1L3P-201ENST00000503331 765 ntBASIC13.05□□□□□ -0.32
SPTA1P02549 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC13.05□□□□□ -0.32
SPTA1P02549 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.05□□□□□ -0.32
SPTA1P02549 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC13.05□□□□□ -0.32
SPTA1P02549 AL591122.2-201ENST00000624125 1853 ntBASIC13.05□□□□□ -0.32
SPTA1P02549 AC068587.6-202ENST00000641839 5619 ntBASIC13.05□□□□□ -0.32
SPTA1P02549 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
SPTA1P02549 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SPTA1P02549 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms