Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC18.25■□□□□ 0.51
NPHP1O15259 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC18.25■□□□□ 0.51
NPHP1O15259 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC18.25■□□□□ 0.51
NPHP1O15259 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC18.25■□□□□ 0.51
NPHP1O15259 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
NPHP1O15259 AL354861.1-201ENST00000445213 355 ntBASIC18.25■□□□□ 0.51
NPHP1O15259 MRPL22P1-201ENST00000505398 616 ntBASIC18.25■□□□□ 0.51
NPHP1O15259 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC18.25■□□□□ 0.51
NPHP1O15259 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.25■□□□□ 0.51
NPHP1O15259 IGHVIII-5-2-201ENST00000522505 261 ntBASIC18.25■□□□□ 0.51
NPHP1O15259 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC18.25■□□□□ 0.51
NPHP1O15259 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC18.25■□□□□ 0.51
NPHP1O15259 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
NPHP1O15259 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC18.25■□□□□ 0.51
NPHP1O15259 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
NPHP1O15259 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
NPHP1O15259 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
NPHP1O15259 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC18.25■□□□□ 0.51
NPHP1O15259 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NPHP1O15259 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC18.24■□□□□ 0.51
NPHP1O15259 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.24■□□□□ 0.51
NPHP1O15259 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
NPHP1O15259 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC18.24■□□□□ 0.51
NPHP1O15259 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC18.24■□□□□ 0.51
NPHP1O15259 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC18.24■□□□□ 0.51
NPHP1O15259 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC18.24■□□□□ 0.51
NPHP1O15259 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC18.24■□□□□ 0.51
NPHP1O15259 RN7SL277P-201ENST00000481521 288 ntBASIC18.24■□□□□ 0.51
NPHP1O15259 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
NPHP1O15259 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
NPHP1O15259 AC003686.1-201ENST00000550956 1034 ntBASIC18.24■□□□□ 0.51
NPHP1O15259 CR383656.3-201ENST00000551315 183 ntBASIC18.24■□□□□ 0.51
NPHP1O15259 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC18.24■□□□□ 0.51
NPHP1O15259 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.24■□□□□ 0.51
NPHP1O15259 HERC2P11-201ENST00000562845 725 ntBASIC18.24■□□□□ 0.51
NPHP1O15259 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC18.24■□□□□ 0.51
NPHP1O15259 AC100756.2-201ENST00000569537 736 ntBASIC18.24■□□□□ 0.51
NPHP1O15259 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.24■□□□□ 0.51
NPHP1O15259 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC18.24■□□□□ 0.51
NPHP1O15259 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC18.24■□□□□ 0.51
NPHP1O15259 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 AC138466.4-201ENST00000623965 852 ntBASIC18.24■□□□□ 0.51
NPHP1O15259 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 KRT8P28-201ENST00000433288 1390 ntBASIC18.24■□□□□ 0.51
NPHP1O15259 AC090502.4-201ENST00000551714 1386 ntBASIC18.24■□□□□ 0.51
NPHP1O15259 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
NPHP1O15259 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.24■□□□□ 0.51
NPHP1O15259 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 LINC01101-201ENST00000622953 1884 ntBASIC18.24■□□□□ 0.51
NPHP1O15259 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
NPHP1O15259 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.24■□□□□ 0.51
NPHP1O15259 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
NPHP1O15259 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NPHP1O15259 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 OR2I1P-210ENST00000642037 4691 ntBASIC18.23■□□□□ 0.51
NPHP1O15259 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
NPHP1O15259 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
NPHP1O15259 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC18.23■□□□□ 0.51
NPHP1O15259 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.23■□□□□ 0.51
NPHP1O15259 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.23■□□□□ 0.51
NPHP1O15259 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.23■□□□□ 0.51
NPHP1O15259 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC18.23■□□□□ 0.51
NPHP1O15259 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms