Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 BRF1-202ENST00000379932 884 ntTSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 MPV17-208ENST00000405076 603 ntTSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 RN7SL399P-201ENST00000471648 279 ntBASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AC104596.2-201ENST00000512793 793 ntBASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 DOC2GP-202ENST00000514950 1163 ntBASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AC022616.1-201ENST00000518688 554 ntBASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AP001582.1-201ENST00000525856 295 ntBASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AC009407.1-201ENST00000568958 598 ntBASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AC008738.7-201ENST00000609744 511 ntBASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AC007431.3-201ENST00000623221 587 ntBASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 SMU1-201ENST00000397149 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 DPYSL5-207ENST00000614712 5128 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 AC131902.2-201ENST00000566892 2172 ntBASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 SPATA13-203ENST00000382108 8463 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 APPBP2-201ENST00000083182 6478 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CHMP1AQ9HD42 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 OSM-203ENST00000403463 464 ntTSL 3 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 TSSK5P-201ENST00000423978 907 ntBASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 AC134915.1-201ENST00000426461 574 ntBASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 METTL21AP1-201ENST00000438852 635 ntBASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 AC004840.1-201ENST00000636359 365 ntBASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 RBMS1-201ENST00000348849 4273 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 FAM155A-201ENST00000375915 8503 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 AC073548.1-201ENST00000624088 1882 ntBASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CHMP1AQ9HD42 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.39
CHMP1AQ9HD42 AL136172.1-201ENST00000598590 1394 ntBASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 LRRC59-203ENST00000576448 1531 ntBASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CHMP1AQ9HD42 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms