Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC073548.1-201ENST00000624088 1882 ntBASIC14.99□□□□□ -0.01
PCDH9Q9HC56 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 TPO-206ENST00000382269 1155 ntTSL 5 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 AL136309.1-201ENST00000403917 691 ntBASIC14.99□□□□□ -0.01
PCDH9Q9HC56 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 HOMER2P2-201ENST00000451621 847 ntBASIC14.99□□□□□ -0.01
PCDH9Q9HC56 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.99□□□□□ -0.01
PCDH9Q9HC56 PPY2P-201ENST00000582808 702 ntBASIC14.99□□□□□ -0.01
PCDH9Q9HC56 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 MIR4259-201ENST00000584466 101 ntBASIC14.99□□□□□ -0.01
PCDH9Q9HC56 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 AC015909.5-201ENST00000624336 2266 ntBASIC14.99□□□□□ -0.01
PCDH9Q9HC56 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 AL022313.4-201ENST00000562756 2046 ntBASIC14.99□□□□□ -0.01
PCDH9Q9HC56 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 AL355994.2-201ENST00000447882 704 ntBASIC14.98□□□□□ -0.01
PCDH9Q9HC56 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 AP006547.1-201ENST00000563435 692 ntBASIC14.98□□□□□ -0.01
PCDH9Q9HC56 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDH9Q9HC56 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PCDH9Q9HC56 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms