Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC14.68□□□□□ -0.06
TRIM4Q9C037 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM4Q9C037 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM4Q9C037 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 RPL5P21-201ENST00000404620 815 ntBASIC14.67□□□□□ -0.06
TRIM4Q9C037 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 SLED1-202ENST00000512051 380 ntBASIC14.67□□□□□ -0.06
TRIM4Q9C037 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 MIR5189-201ENST00000577370 114 ntBASIC14.67□□□□□ -0.06
TRIM4Q9C037 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 CU634019.7-201ENST00000624153 1185 ntBASIC14.67□□□□□ -0.06
TRIM4Q9C037 FP236241.2-201ENST00000624906 1185 ntBASIC14.67□□□□□ -0.06
TRIM4Q9C037 ABBA01031663.1-201ENST00000635630 790 ntBASIC14.67□□□□□ -0.06
TRIM4Q9C037 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM4Q9C037 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM4Q9C037 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM4Q9C037 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TRIM4Q9C037 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM4Q9C037 ZBED1P1-201ENST00000502364 1930 ntBASIC14.66□□□□□ -0.06
TRIM4Q9C037 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM4Q9C037 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM4Q9C037 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
TRIM4Q9C037 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM4Q9C037 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC14.66□□□□□ -0.06
TRIM4Q9C037 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM4Q9C037 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM4Q9C037 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.66□□□□□ -0.06
TRIM4Q9C037 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM4Q9C037 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms