Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 MTHFR-210ENST00000641407 2387 ntBASIC13.87□□□□□ -0.19
VPS13AQ96RL7 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
VPS13AQ96RL7 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 NALT1-202ENST00000450304 437 ntTSL 3 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 RN7SL87P-201ENST00000497657 288 ntBASIC13.86□□□□□ -0.19
VPS13AQ96RL7 CETN3-205ENST00000522842 664 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 KF455155.1-201ENST00000604493 303 ntBASIC13.86□□□□□ -0.19
VPS13AQ96RL7 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 CCT8L1P-201ENST00000465400 1674 ntBASIC13.86□□□□□ -0.19
VPS13AQ96RL7 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 TBC1D3P6-201ENST00000505954 962 ntBASIC13.86□□□□□ -0.19
VPS13AQ96RL7 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13AQ96RL7 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 POP5-201ENST00000341039 913 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 CA5BP1-205ENST00000435806 1064 ntBASIC13.85□□□□□ -0.19
VPS13AQ96RL7 AC233724.9-201ENST00000511694 407 ntBASIC13.85□□□□□ -0.19
VPS13AQ96RL7 AC103724.2-201ENST00000520355 476 ntBASIC13.85□□□□□ -0.19
VPS13AQ96RL7 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 MIR181D-201ENST00000384853 137 ntBASIC13.85□□□□□ -0.19
VPS13AQ96RL7 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 BAK1P2-201ENST00000532665 631 ntBASIC13.85□□□□□ -0.19
VPS13AQ96RL7 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 FAM187B2P-201ENST00000577135 713 ntBASIC13.85□□□□□ -0.19
VPS13AQ96RL7 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC13.85□□□□□ -0.19
VPS13AQ96RL7 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS13AQ96RL7 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms