Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 AL022313.4-201ENST00000562756 2046 ntBASIC17.33■□□□□ 0.36
RNF20Q5VTR2 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 AMT-239ENST00000636865 1914 ntTSL 5 BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RNF20Q5VTR2 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 C1R-201ENST00000535233 2211 ntTSL 2 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 AC126335.2-201ENST00000623362 4637 ntBASIC17.32■□□□□ 0.36
RNF20Q5VTR2 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 AC099336.1-201ENST00000417053 1171 ntBASIC17.32■□□□□ 0.36
RNF20Q5VTR2 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 AC012441.2-201ENST00000444843 739 ntBASIC17.32■□□□□ 0.36
RNF20Q5VTR2 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 MIR4741-201ENST00000579822 90 ntBASIC17.32■□□□□ 0.36
RNF20Q5VTR2 DRG2-220ENST00000583355 891 ntTSL 3 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RNF20Q5VTR2 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 REXO1L6P-201ENST00000603433 1515 ntBASIC17.31■□□□□ 0.36
RNF20Q5VTR2 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 AC092053.3-201ENST00000641308 4975 ntBASIC17.31■□□□□ 0.36
RNF20Q5VTR2 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 AC022210.1-201ENST00000449856 793 ntBASIC17.31■□□□□ 0.36
RNF20Q5VTR2 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 HILS1-202ENST00000545329 423 ntBASIC17.31■□□□□ 0.36
RNF20Q5VTR2 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms