Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AC244394.1-201ENST00000435000 1665 ntBASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 VDAC1P1-201ENST00000439229 848 ntBASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AC234782.1-201ENST00000451950 919 ntBASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 TPT1P11-201ENST00000458482 498 ntBASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 HLA-J-204ENST00000495278 958 ntBASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AC103988.2-201ENST00000561804 725 ntBASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AL353770.1-201ENST00000614915 403 ntBASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AC130686.1-201ENST00000622936 2466 ntBASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC144BQ3MJ40 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 ISCA2P1-201ENST00000425548 448 ntBASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 AC008805.1-201ENST00000590892 364 ntBASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 GALC-206ENST00000544807 2528 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC144BQ3MJ40 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AC027612.1-201ENST00000445234 2395 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AL359183.1-201ENST00000623796 2132 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 AC068587.6-202ENST00000641839 5619 ntBASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC144BQ3MJ40 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms