Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.28
GABPAQ06546 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.83■□□□□ 0.28
GABPAQ06546 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
GABPAQ06546 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
GABPAQ06546 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
GABPAQ06546 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.82■□□□□ 0.28
GABPAQ06546 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.82■□□□□ 0.28
GABPAQ06546 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
GABPAQ06546 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.82■□□□□ 0.28
GABPAQ06546 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
GABPAQ06546 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
GABPAQ06546 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.82■□□□□ 0.28
GABPAQ06546 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.82■□□□□ 0.28
GABPAQ06546 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.82■□□□□ 0.28
GABPAQ06546 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.82■□□□□ 0.28
GABPAQ06546 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
GABPAQ06546 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC16.82■□□□□ 0.28
GABPAQ06546 PPP1R2P4-201ENST00000424051 595 ntBASIC16.82■□□□□ 0.28
GABPAQ06546 RPL7P35-201ENST00000446943 740 ntBASIC16.82■□□□□ 0.28
GABPAQ06546 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC16.82■□□□□ 0.28
GABPAQ06546 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC16.82■□□□□ 0.28
GABPAQ06546 AC005740.1-201ENST00000515639 522 ntBASIC16.82■□□□□ 0.28
GABPAQ06546 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC16.82■□□□□ 0.28
GABPAQ06546 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.82■□□□□ 0.28
GABPAQ06546 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.82■□□□□ 0.28
GABPAQ06546 AP000911.2-201ENST00000534330 502 ntBASIC16.82■□□□□ 0.28
GABPAQ06546 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC16.82■□□□□ 0.28
GABPAQ06546 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
GABPAQ06546 AC005041.3-201ENST00000606287 649 ntBASIC16.82■□□□□ 0.28
GABPAQ06546 AC005618.3-201ENST00000624928 458 ntBASIC16.82■□□□□ 0.28
GABPAQ06546 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.82■□□□□ 0.28
GABPAQ06546 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
GABPAQ06546 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GABPAQ06546 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.81■□□□□ 0.28
GABPAQ06546 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
GABPAQ06546 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
GABPAQ06546 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.81■□□□□ 0.28
GABPAQ06546 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
GABPAQ06546 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
GABPAQ06546 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC16.81■□□□□ 0.28
GABPAQ06546 BX679664.3-201ENST00000414070 555 ntBASIC16.81■□□□□ 0.28
GABPAQ06546 GUSBP10-201ENST00000417412 665 ntBASIC16.81■□□□□ 0.28
GABPAQ06546 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC16.81■□□□□ 0.28
GABPAQ06546 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC16.81■□□□□ 0.28
GABPAQ06546 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC16.81■□□□□ 0.28
GABPAQ06546 AC113935.1-201ENST00000471722 555 ntBASIC16.81■□□□□ 0.28
GABPAQ06546 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC16.81■□□□□ 0.28
GABPAQ06546 MIR4649-201ENST00000582839 64 ntBASIC16.81■□□□□ 0.28
GABPAQ06546 AL021707.6-201ENST00000609212 491 ntBASIC16.81■□□□□ 0.28
GABPAQ06546 WT1-AS_6.1-201ENST00000614919 121 ntBASIC16.81■□□□□ 0.28
GABPAQ06546 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 AL591122.2-201ENST00000624125 1853 ntBASIC16.81■□□□□ 0.28
GABPAQ06546 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.81■□□□□ 0.28
GABPAQ06546 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
GABPAQ06546 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC16.81■□□□□ 0.28
GABPAQ06546 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.81■□□□□ 0.28
GABPAQ06546 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
GABPAQ06546 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GABPAQ06546 AC006372.4-201ENST00000624122 1543 ntBASIC16.8■□□□□ 0.28
GABPAQ06546 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
GABPAQ06546 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
GABPAQ06546 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.8■□□□□ 0.28
GABPAQ06546 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
GABPAQ06546 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
GABPAQ06546 AC012617.1-204ENST00000586340 2305 ntBASIC16.8■□□□□ 0.28
GABPAQ06546 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.8■□□□□ 0.28
GABPAQ06546 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
GABPAQ06546 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
GABPAQ06546 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.8■□□□□ 0.28
GABPAQ06546 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
GABPAQ06546 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
GABPAQ06546 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
GABPAQ06546 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
GABPAQ06546 AC103592.1-201ENST00000394513 664 ntBASIC16.8■□□□□ 0.28
GABPAQ06546 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC16.8■□□□□ 0.28
GABPAQ06546 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms