Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC090505.1-201ENST00000430515 1834 ntBASIC13.44□□□□□ -0.26
RNF4P78317 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.44□□□□□ -0.26
RNF4P78317 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.44□□□□□ -0.26
RNF4P78317 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
RNF4P78317 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC13.44□□□□□ -0.26
RNF4P78317 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.44□□□□□ -0.26
RNF4P78317 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC13.44□□□□□ -0.26
RNF4P78317 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC13.44□□□□□ -0.26
RNF4P78317 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.44□□□□□ -0.26
RNF4P78317 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13.44□□□□□ -0.26
RNF4P78317 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.44□□□□□ -0.26
RNF4P78317 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.44□□□□□ -0.26
RNF4P78317 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.44□□□□□ -0.26
RNF4P78317 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.44□□□□□ -0.26
RNF4P78317 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
RNF4P78317 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.44□□□□□ -0.26
RNF4P78317 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.44□□□□□ -0.26
RNF4P78317 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.44□□□□□ -0.26
RNF4P78317 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.44□□□□□ -0.26
RNF4P78317 AL157791.1-201ENST00000553667 1699 ntBASIC13.44□□□□□ -0.26
RNF4P78317 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.43□□□□□ -0.26
RNF4P78317 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
RNF4P78317 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
RNF4P78317 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 AC064801.2-201ENST00000625052 1303 ntBASIC13.43□□□□□ -0.26
RNF4P78317 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.43□□□□□ -0.26
RNF4P78317 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
RNF4P78317 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
RNF4P78317 MIR769-201ENST00000390225 118 ntBASIC13.43□□□□□ -0.26
RNF4P78317 CYP46A4P-201ENST00000414953 267 ntBASIC13.43□□□□□ -0.26
RNF4P78317 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 OR2R1P-201ENST00000441404 914 ntBASIC13.43□□□□□ -0.26
RNF4P78317 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.43□□□□□ -0.26
RNF4P78317 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC13.43□□□□□ -0.26
RNF4P78317 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC13.43□□□□□ -0.26
RNF4P78317 ADM-202ENST00000524948 584 ntTSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
RNF4P78317 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 RN7SL774P-201ENST00000577467 290 ntBASIC13.43□□□□□ -0.26
RNF4P78317 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.43□□□□□ -0.26
RNF4P78317 AC021016.3-201ENST00000608367 477 ntBASIC13.43□□□□□ -0.26
RNF4P78317 AL157813.1-201ENST00000612996 587 ntBASIC13.43□□□□□ -0.26
RNF4P78317 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.43□□□□□ -0.26
RNF4P78317 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
RNF4P78317 NAP1L6-202ENST00000641404 1222 ntBASIC13.43□□□□□ -0.26
RNF4P78317 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.43□□□□□ -0.26
RNF4P78317 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RNF4P78317 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
RNF4P78317 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.43□□□□□ -0.26
RNF4P78317 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
RNF4P78317 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.43□□□□□ -0.26
RNF4P78317 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
RNF4P78317 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
RNF4P78317 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.42□□□□□ -0.26
RNF4P78317 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms