Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC063926.2-201ENST00000623766 1308 ntBASIC13.01□□□□□ -0.33
CLRN1P58418 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.01□□□□□ -0.33
CLRN1P58418 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.01□□□□□ -0.33
CLRN1P58418 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.01□□□□□ -0.33
CLRN1P58418 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.01□□□□□ -0.33
CLRN1P58418 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.01□□□□□ -0.33
CLRN1P58418 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.01□□□□□ -0.33
CLRN1P58418 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.01□□□□□ -0.33
CLRN1P58418 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.01□□□□□ -0.33
CLRN1P58418 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CLRN1P58418 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13□□□□□ -0.33
CLRN1P58418 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13□□□□□ -0.33
CLRN1P58418 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 AL928921.2-201ENST00000641325 2442 ntBASIC13□□□□□ -0.33
CLRN1P58418 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13□□□□□ -0.33
CLRN1P58418 HSPA8P5-201ENST00000456928 2069 ntBASIC13□□□□□ -0.33
CLRN1P58418 AC016397.2-201ENST00000624848 1985 ntBASIC13□□□□□ -0.33
CLRN1P58418 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13□□□□□ -0.33
CLRN1P58418 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13□□□□□ -0.33
CLRN1P58418 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CLRN1P58418 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CLRN1P58418 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CLRN1P58418 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13□□□□□ -0.33
CLRN1P58418 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CLRN1P58418 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CLRN1P58418 TCAM1P-207ENST00000485295 1537 ntBASIC13□□□□□ -0.33
CLRN1P58418 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
CLRN1P58418 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC13□□□□□ -0.33
CLRN1P58418 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13□□□□□ -0.33
CLRN1P58418 AC010141.1-201ENST00000411585 623 ntBASIC13□□□□□ -0.33
CLRN1P58418 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13□□□□□ -0.33
CLRN1P58418 GPR53P-205ENST00000457298 1084 ntBASIC13□□□□□ -0.33
CLRN1P58418 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13□□□□□ -0.33
CLRN1P58418 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13□□□□□ -0.33
CLRN1P58418 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13□□□□□ -0.33
CLRN1P58418 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13□□□□□ -0.33
CLRN1P58418 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13□□□□□ -0.33
CLRN1P58418 HNRNPA1P48-202ENST00000565308 961 ntBASIC13□□□□□ -0.33
CLRN1P58418 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13□□□□□ -0.33
CLRN1P58418 AC008687.7-202ENST00000637404 953 ntBASIC13□□□□□ -0.33
CLRN1P58418 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13□□□□□ -0.33
CLRN1P58418 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13□□□□□ -0.33
CLRN1P58418 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13□□□□□ -0.33
CLRN1P58418 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CLRN1P58418 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CLRN1P58418 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
CLRN1P58418 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CLRN1P58418 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
CLRN1P58418 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
CLRN1P58418 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC12.99□□□□□ -0.33
CLRN1P58418 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
CLRN1P58418 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
CLRN1P58418 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
CLRN1P58418 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
CLRN1P58418 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.99□□□□□ -0.33
CLRN1P58418 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC12.99□□□□□ -0.33
CLRN1P58418 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CLRN1P58418 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC12.99□□□□□ -0.33
CLRN1P58418 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC12.99□□□□□ -0.33
CLRN1P58418 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms