Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC092580.1-201ENST00000433998 658 ntBASIC15.25■□□□□ 0.03
BDNFP23560 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC15.25■□□□□ 0.03
BDNFP23560 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 AC242376.1-201ENST00000559033 726 ntBASIC15.25■□□□□ 0.03
BDNFP23560 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC15.25■□□□□ 0.03
BDNFP23560 MIR4754-201ENST00000582477 89 ntBASIC15.25■□□□□ 0.03
BDNFP23560 AL133499.1-201ENST00000596207 608 ntBASIC15.25■□□□□ 0.03
BDNFP23560 AC090386.2-201ENST00000623010 1039 ntBASIC15.25■□□□□ 0.03
BDNFP23560 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BDNFP23560 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
BDNFP23560 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.24■□□□□ 0.03
BDNFP23560 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.24■□□□□ 0.03
BDNFP23560 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
BDNFP23560 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
BDNFP23560 AC097376.2-205ENST00000610159 5334 ntBASIC15.24■□□□□ 0.03
BDNFP23560 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 JTB-202ENST00000356648 1040 ntTSL 2 BASIC15.24■□□□□ 0.03
BDNFP23560 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC15.24■□□□□ 0.03
BDNFP23560 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 HLA-DQB2-229ENST00000411527 1059 ntBASIC15.24■□□□□ 0.03
BDNFP23560 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC15.24■□□□□ 0.03
BDNFP23560 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC15.24■□□□□ 0.03
BDNFP23560 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC15.24■□□□□ 0.03
BDNFP23560 RHEB-207ENST00000496004 744 ntTSL 2 BASIC15.24■□□□□ 0.03
BDNFP23560 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC15.24■□□□□ 0.03
BDNFP23560 RNA5SP423-201ENST00000517127 109 ntBASIC15.24■□□□□ 0.03
BDNFP23560 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
BDNFP23560 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 AC104506.1-201ENST00000609247 429 ntBASIC15.24■□□□□ 0.03
BDNFP23560 AC015967.2-201ENST00000624092 234 ntBASIC15.24■□□□□ 0.03
BDNFP23560 AC006435.4-201ENST00000625037 234 ntBASIC15.24■□□□□ 0.03
BDNFP23560 AL356737.1-201ENST00000634391 234 ntBASIC15.24■□□□□ 0.03
BDNFP23560 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.24■□□□□ 0.03
BDNFP23560 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.24■□□□□ 0.03
BDNFP23560 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 AC015802.1-201ENST00000588104 1449 ntBASIC15.24■□□□□ 0.03
BDNFP23560 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
BDNFP23560 AC090505.1-201ENST00000430515 1834 ntBASIC15.24■□□□□ 0.03
BDNFP23560 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BDNFP23560 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 AC012617.1-204ENST00000586340 2305 ntBASIC15.23■□□□□ 0.03
BDNFP23560 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.23■□□□□ 0.03
BDNFP23560 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.23■□□□□ 0.03
BDNFP23560 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.23■□□□□ 0.03
BDNFP23560 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.23■□□□□ 0.03
BDNFP23560 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
BDNFP23560 KRT8P19-201ENST00000551916 1455 ntBASIC15.23■□□□□ 0.03
BDNFP23560 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms