Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
HMGB1P09429 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB1P09429 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC17.08■□□□□ 0.33
HMGB1P09429 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
HMGB1P09429 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB1P09429 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB1P09429 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB1P09429 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC17.08■□□□□ 0.33
HMGB1P09429 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.08■□□□□ 0.33
HMGB1P09429 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
HMGB1P09429 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGB1P09429 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 MIR663B-201ENST00000408361 115 ntBASIC17.08■□□□□ 0.32
HMGB1P09429 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 ATP5G2P4-201ENST00000442175 420 ntBASIC17.08■□□□□ 0.32
HMGB1P09429 AC021723.1-201ENST00000486306 515 ntBASIC17.08■□□□□ 0.32
HMGB1P09429 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGB1P09429 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGB1P09429 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
HMGB1P09429 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
HMGB1P09429 AC140658.4-201ENST00000561990 352 ntBASIC17.08■□□□□ 0.32
HMGB1P09429 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGB1P09429 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC17.08■□□□□ 0.32
HMGB1P09429 DIO1-215ENST00000610607 796 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGB1P09429 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
HMGB1P09429 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HMGB1P09429 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGB1P09429 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB1P09429 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGB1P09429 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HMGB1P09429 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HMGB1P09429 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB1P09429 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB1P09429 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGB1P09429 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 AL157996.1-201ENST00000624684 2299 ntBASIC17.07■□□□□ 0.32
HMGB1P09429 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGB1P09429 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC17.07■□□□□ 0.32
HMGB1P09429 PGAM1P5-201ENST00000548011 764 ntBASIC17.07■□□□□ 0.32
HMGB1P09429 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGB1P09429 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB1P09429 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
HMGB1P09429 ANKZF1-202ENST00000409849 2155 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 FUK-202ENST00000378912 3925 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGB1P09429 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
HMGB1P09429 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGB1P09429 MBLAC2-202ENST00000514906 1936 ntBASIC17.06■□□□□ 0.32
HMGB1P09429 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGB1P09429 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HMGB1P09429 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HMGB1P09429 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
HMGB1P09429 BNIP3P42-201ENST00000454982 569 ntBASIC17.06■□□□□ 0.32
HMGB1P09429 KRT18P15-201ENST00000458108 1291 ntBASIC17.06■□□□□ 0.32
HMGB1P09429 FAM86HP-204ENST00000513466 959 ntBASIC17.06■□□□□ 0.32
HMGB1P09429 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGB1P09429 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGB1P09429 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HMGB1P09429 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGB1P09429 KLK3-211ENST00000597483 810 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGB1P09429 BNIP3P29-201ENST00000598302 571 ntBASIC17.06■□□□□ 0.32
HMGB1P09429 BAP1-211ENST00000615113 489 ntBASIC17.06■□□□□ 0.32
HMGB1P09429 AC011447.5-201ENST00000616168 564 ntBASIC17.06■□□□□ 0.32
HMGB1P09429 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms