Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CLDN9O95484 AC104581.4-201ENST00000623126 3052 ntBASIC14.05□□□□□ -0.16
CLDN9O95484 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CLDN9O95484 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLDN9O95484 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.05□□□□□ -0.16
CLDN9O95484 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 AC131212.3-201ENST00000624087 4219 ntBASIC14.04□□□□□ -0.16
CLDN9O95484 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.04□□□□□ -0.16
CLDN9O95484 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CLDN9O95484 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 USP17L6P-201ENST00000382470 1197 ntBASIC14.04□□□□□ -0.16
CLDN9O95484 BOLA2P3-201ENST00000404566 256 ntBASIC14.04□□□□□ -0.16
CLDN9O95484 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.04□□□□□ -0.16
CLDN9O95484 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.04□□□□□ -0.16
CLDN9O95484 AP006547.1-201ENST00000563435 692 ntBASIC14.04□□□□□ -0.16
CLDN9O95484 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.04□□□□□ -0.16
CLDN9O95484 DUX4L46-201ENST00000566845 751 ntBASIC14.04□□□□□ -0.16
CLDN9O95484 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 AC132192.2-201ENST00000596206 1147 ntBASIC14.04□□□□□ -0.16
CLDN9O95484 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.04□□□□□ -0.16
CLDN9O95484 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CLDN9O95484 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.04□□□□□ -0.16
CLDN9O95484 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLDN9O95484 AL031595.1-201ENST00000623969 4709 ntBASIC14.03□□□□□ -0.16
CLDN9O95484 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.03□□□□□ -0.16
CLDN9O95484 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CLDN9O95484 AC089987.1-201ENST00000551654 2209 ntBASIC14.03□□□□□ -0.16
CLDN9O95484 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CLDN9O95484 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.03□□□□□ -0.16
CLDN9O95484 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CLDN9O95484 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CLDN9O95484 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.03□□□□□ -0.16
CLDN9O95484 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.03□□□□□ -0.16
CLDN9O95484 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 KLF2P4-201ENST00000451959 1225 ntBASIC14.03□□□□□ -0.16
CLDN9O95484 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.03□□□□□ -0.16
CLDN9O95484 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.03□□□□□ -0.16
CLDN9O95484 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLDN9O95484 AC005225.4-201ENST00000557330 545 ntBASIC14.03□□□□□ -0.16
CLDN9O95484 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.03□□□□□ -0.16
CLDN9O95484 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CLDN9O95484 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms