Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.2□□□□□ -0.14
SIX3O95343 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
SIX3O95343 MIR1202-201ENST00000408529 83 ntBASIC14.2□□□□□ -0.14
SIX3O95343 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.2□□□□□ -0.14
SIX3O95343 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.2□□□□□ -0.14
SIX3O95343 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.2□□□□□ -0.14
SIX3O95343 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.2□□□□□ -0.14
SIX3O95343 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
SIX3O95343 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.2□□□□□ -0.14
SIX3O95343 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.2□□□□□ -0.14
SIX3O95343 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.2□□□□□ -0.14
SIX3O95343 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SIX3O95343 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.2□□□□□ -0.14
SIX3O95343 AC104506.1-201ENST00000609247 429 ntBASIC14.2□□□□□ -0.14
SIX3O95343 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.2□□□□□ -0.14
SIX3O95343 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.2□□□□□ -0.14
SIX3O95343 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
SIX3O95343 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SIX3O95343 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SIX3O95343 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.19□□□□□ -0.14
SIX3O95343 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SIX3O95343 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.19□□□□□ -0.14
SIX3O95343 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.19□□□□□ -0.14
SIX3O95343 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.19□□□□□ -0.14
SIX3O95343 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.19□□□□□ -0.14
SIX3O95343 AL136309.1-201ENST00000403917 691 ntBASIC14.19□□□□□ -0.14
SIX3O95343 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.19□□□□□ -0.14
SIX3O95343 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.19□□□□□ -0.14
SIX3O95343 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.19□□□□□ -0.14
SIX3O95343 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.19□□□□□ -0.14
SIX3O95343 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.19□□□□□ -0.14
SIX3O95343 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.19□□□□□ -0.14
SIX3O95343 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.19□□□□□ -0.14
SIX3O95343 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.19□□□□□ -0.14
SIX3O95343 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.19□□□□□ -0.14
SIX3O95343 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.19□□□□□ -0.14
SIX3O95343 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
SIX3O95343 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.19□□□□□ -0.14
SIX3O95343 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SIX3O95343 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.18□□□□□ -0.14
SIX3O95343 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SIX3O95343 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SIX3O95343 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.18□□□□□ -0.14
SIX3O95343 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SIX3O95343 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SIX3O95343 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SIX3O95343 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms