Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC18.28■□□□□ 0.52
NPHP1O15259 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 KRT8P31-201ENST00000504812 1408 ntBASIC18.28■□□□□ 0.52
NPHP1O15259 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC18.28■□□□□ 0.52
NPHP1O15259 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 MROH4P-201ENST00000431302 1578 ntBASIC18.28■□□□□ 0.52
NPHP1O15259 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.28■□□□□ 0.52
NPHP1O15259 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.28■□□□□ 0.52
NPHP1O15259 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC18.28■□□□□ 0.52
NPHP1O15259 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
NPHP1O15259 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
NPHP1O15259 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.27■□□□□ 0.52
NPHP1O15259 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
NPHP1O15259 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
NPHP1O15259 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 AC009093.10-201ENST00000641956 1442 ntBASIC18.27■□□□□ 0.52
NPHP1O15259 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC18.27■□□□□ 0.52
NPHP1O15259 KRT17P5-201ENST00000332088 839 ntBASIC18.27■□□□□ 0.52
NPHP1O15259 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC18.27■□□□□ 0.52
NPHP1O15259 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC18.27■□□□□ 0.52
NPHP1O15259 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
NPHP1O15259 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC18.27■□□□□ 0.52
NPHP1O15259 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 MT3-203ENST00000565838 421 ntTSL 3 BASIC18.27■□□□□ 0.52
NPHP1O15259 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC18.27■□□□□ 0.52
NPHP1O15259 AP000322.3-201ENST00000608665 388 ntBASIC18.27■□□□□ 0.52
NPHP1O15259 AC112693.3-201ENST00000624819 1983 ntBASIC18.27■□□□□ 0.52
NPHP1O15259 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.27■□□□□ 0.52
NPHP1O15259 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NPHP1O15259 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
NPHP1O15259 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
NPHP1O15259 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
NPHP1O15259 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NPHP1O15259 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
NPHP1O15259 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
NPHP1O15259 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.27■□□□□ 0.51
NPHP1O15259 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NPHP1O15259 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NPHP1O15259 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC18.27■□□□□ 0.51
NPHP1O15259 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC18.26■□□□□ 0.51
NPHP1O15259 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC18.26■□□□□ 0.51
NPHP1O15259 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
NPHP1O15259 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
NPHP1O15259 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
NPHP1O15259 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
NPHP1O15259 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC18.26■□□□□ 0.51
NPHP1O15259 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC18.26■□□□□ 0.51
NPHP1O15259 AC092638.2-201ENST00000441105 947 ntBASIC18.26■□□□□ 0.51
NPHP1O15259 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC18.26■□□□□ 0.51
NPHP1O15259 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
NPHP1O15259 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.26■□□□□ 0.51
NPHP1O15259 ORAOV1P1-201ENST00000503108 395 ntBASIC18.26■□□□□ 0.51
NPHP1O15259 DRG2-220ENST00000583355 891 ntTSL 3 BASIC18.26■□□□□ 0.51
NPHP1O15259 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC18.26■□□□□ 0.51
NPHP1O15259 AL022334.2-201ENST00000610000 484 ntBASIC18.26■□□□□ 0.51
NPHP1O15259 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
NPHP1O15259 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC18.26■□□□□ 0.51
NPHP1O15259 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
NPHP1O15259 HLA-DQB1-202ENST00000399079 1501 ntBASIC18.26■□□□□ 0.51
NPHP1O15259 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC18.26■□□□□ 0.51
NPHP1O15259 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC18.26■□□□□ 0.51
NPHP1O15259 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.26■□□□□ 0.51
NPHP1O15259 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NPHP1O15259 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
NPHP1O15259 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms