Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 AC010141.1-201ENST00000411585 623 ntBASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 AC132938.2-201ENST00000579188 680 ntBASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 AL591163.1-201ENST00000641757 987 ntBASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 AL355994.2-201ENST00000447882 704 ntBASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 C2orf69P2-201ENST00000562032 1123 ntBASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 RN7SL602P-201ENST00000578326 324 ntBASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 IGHV3-72-202ENST00000621503 303 ntBASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HIF3AQ9Y2N7 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms